Miyakogusa Predicted Gene

Lj3g3v3599460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3599460.1 tr|G7JRL6|G7JRL6_MEDTR Biotin synthase
OS=Medicago truncatula GN=MTR_4g076870 PE=3 SV=1,88.1,0,Radical SAM
enzymes,NULL; BATS,Biotin/thiamin synthesis-associated protein;
Radical_SAM,Radical SAM;,CUFF.46022.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily prot...   617   e-177

>AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily protein
           | chr2:18010918-18013129 REVERSE LENGTH=378
          Length = 378

 Score =  617 bits (1591), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/378 (77%), Positives = 328/378 (86%), Gaps = 5/378 (1%)

Query: 1   MFLVRPIFRTHPKPXXX----XXXXXXXXXPAAIQAERTIKQGPRNDWTRDEVKSIYDSP 56
           M LVR +FR+  +P                 A+ +AERTI++GPRNDW+RDE+KS+YDSP
Sbjct: 1   MMLVRSVFRSQLRPSVSGGLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKSVYDSP 60

Query: 57  VLDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKAQRLLDKE 116
           +LDLLFHGAQVHRH HNFREVQQCTLLS+KTGGCSEDCSYCPQSSRY TG+KAQRL+ K+
Sbjct: 61  LLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKD 120

Query: 117 AVIQAANKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIRGMGMEVCCTLGMIEKQ 176
           AVI AA KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+KEIRGMGMEVCCTLGMIEKQ
Sbjct: 121 AVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQ 180

Query: 177 QAVDLKKAGLTAYNHNLDTSREYYPNVITTRTYDERLQTLEFVRDAGINVCSGGIIGLGE 236
           QA++LKKAGLTAYNHNLDTSREYYPNVITTR+YD+RL+TL  VRDAGINVCSGGIIGLGE
Sbjct: 181 QALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGE 240

Query: 237 AEEDRVGXXXXXXXXXXXXESVPINALIAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 296
           AEEDR+G            ESVPINAL+AVKGTPL+DQKPVEIWEMIRMI TARIVMPKA
Sbjct: 241 AEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKA 300

Query: 297 MVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTANNDFDADQLMFKVLGLLPKAPSF 356
           MVRLSAGRVRFSM EQALCFLAGANSIFTGEKLLTT NNDFDADQLMFK LGL+PK PSF
Sbjct: 301 MVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSF 360

Query: 357 QDDETNEAEDIKEAASSS 374
            +D++ E+E+ ++ AS+S
Sbjct: 361 SEDDS-ESENCEKVASAS 377