Miyakogusa Predicted Gene

Lj3g3v3579340.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3579340.2 Non Chatacterized Hit- tr|I1INV3|I1INV3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.78,0.0000000007,FYVE/PHD zinc finger,Zinc finger,
FYVE/PHD-type; no description,Zinc finger, RING/FYVE/PHD-type;
seg,CUFF.46012.2
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12400.1 | Symbols:  | DNA binding;zinc ion binding;DNA bindi...   115   2e-26
AT5G35210.2 | Symbols:  | metalloendopeptidases;zinc ion binding...    50   8e-07
AT5G35210.1 | Symbols:  | metalloendopeptidases;zinc ion binding...    50   1e-06

>AT5G12400.1 | Symbols:  | DNA binding;zinc ion binding;DNA binding |
            chr5:4013813-4021018 FORWARD LENGTH=1602
          Length = 1602

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 8/118 (6%)

Query: 48   VTSKRKRTG--YSYWLNGLWLSRKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLC--- 102
            ++ ++ RT    +YWLNGL LSRK  +ERV  F  +++ V  ++     D+PKC LC   
Sbjct: 1482 ISIRKARTDRCLNYWLNGLLLSRKAGNERVHQFHRERYYVPLENSDSDHDQPKCHLCGSI 1541

Query: 103  -CGDGCTLNYIACEICGEWFHGDAFGLTVENVGQLIGFRCHVCRDRDAPICPHMNSSA 159
                G T  +I+CE+CGEW+HGDA+GL  +N   +IGFRCH+CR + +P CPHM S+ 
Sbjct: 1542 ESKSGST--FISCELCGEWYHGDAYGLNEKNSSMVIGFRCHLCRKQSSPTCPHMRSTT 1597


>AT5G35210.2 | Symbols:  | metalloendopeptidases;zinc ion binding;DNA
            binding | chr5:13476213-13482238 REVERSE LENGTH=1539
          Length = 1539

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 90   FSGSRDRPKCCLCCG-----DGCTLNYIACEICGEWFHGDAFGLTVENVGQLIGFRCHVC 144
             +G  D+P     CG         L YI C  C +WFH +A  L    + +++GF+C  C
Sbjct: 1225 LAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKCCKC 1284

Query: 145  RDRDAPICPHMN 156
            R   +P CP+M+
Sbjct: 1285 RRIRSPDCPYMD 1296


>AT5G35210.1 | Symbols:  | metalloendopeptidases;zinc ion binding;DNA
            binding | chr5:13474499-13482238 REVERSE LENGTH=1706
          Length = 1706

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 90   FSGSRDRPKCCLCCG-----DGCTLNYIACEICGEWFHGDAFGLTVENVGQLIGFRCHVC 144
             +G  D+P     CG         L YI C  C +WFH +A  L    + +++GF+C  C
Sbjct: 1225 LAGRSDKPSLEPVCGICLLPYNPGLTYIHCTKCEKWFHTEAVKLKDSQIPEVVGFKCCKC 1284

Query: 145  RDRDAPICPHMN 156
            R   +P CP+M+
Sbjct: 1285 RRIRSPDCPYMD 1296