Miyakogusa Predicted Gene

Lj3g3v3568300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3568300.1 Non Chatacterized Hit- tr|F6H698|F6H698_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,51.61,2e-18,seg,NULL; HYPOTHETICAL PROTEIN,NULL; POLYCOMB-LIKE
TRANSCRIPTION FACTOR,NULL,gene.g51071.t1.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain p...   139   3e-33
AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain p...   139   3e-33
AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with RI...    91   7e-19

>AT4G29940.1 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=796
          Length = 796

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 81/98 (82%), Gaps = 1/98 (1%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           YLLIKMK++QNLIDAY+ EGWKGQSREKIRP+KEL+RA+K+ILNCKL +RDAIRQLD LS
Sbjct: 111 YLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGLRDAIRQLDLLS 170

Query: 119 SLGSIEDSVIDPDGSVYHEH-FLLETKAGSAIFVNDVF 155
           S+GS+E+ VI  DGS++H+H F  E  +  A   ND+ 
Sbjct: 171 SVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDII 208


>AT4G29940.2 | Symbols: PRHA | pathogenesis related homeodomain
           protein  A | chr4:14648346-14652710 REVERSE LENGTH=769
          Length = 769

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 81/98 (82%), Gaps = 1/98 (1%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           YLLIKMK++QNLIDAY+ EGWKGQSREKIRP+KEL+RA+K+ILNCKL +RDAIRQLD LS
Sbjct: 111 YLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGLRDAIRQLDLLS 170

Query: 119 SLGSIEDSVIDPDGSVYHEH-FLLETKAGSAIFVNDVF 155
           S+GS+E+ VI  DGS++H+H F  E  +  A   ND+ 
Sbjct: 171 SVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDII 208


>AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with
           RING/FYVE/PHD-type zinc finger domain |
           chr3:6763205-6766049 REVERSE LENGTH=723
          Length = 723

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           Y L ++  EQ+LIDAYS EGWKG S EKIRPEKEL+RA K+IL  KL IRD  + LD+L 
Sbjct: 186 YFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKIRDLFQHLDTLC 245

Query: 119 SLGSIEDSVIDPDGSVYHEHFLLETKAGS 147
           + GS+ +S+ D DG +  E      K GS
Sbjct: 246 AEGSLPESLFDTDGEISSEDIFC-AKCGS 273