Miyakogusa Predicted Gene

Lj3g3v3541670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3541670.1 Non Chatacterized Hit- tr|B6U9Q2|B6U9Q2_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,42.97,3e-18,seg,NULL,CUFF.45967.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21180.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    82   7e-17

>AT2G21180.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins
           in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:9074956-9075351 REVERSE
           LENGTH=131
          Length = 131

 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 1   MAYDRNRGSSVMEGFTLNPLPYPVXXXXXXXXXXXXXSWYLSYEEVVETAQEQFGWVLFA 60
           MAY+  R SS+++ F+L+PLPYPV             SWY S EE  E+A+EQ  + L  
Sbjct: 1   MAYEERR-SSILDSFSLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLL 59

Query: 61  TPVVLILLVRWLSSMENTDWFSGLSPWSGRGRIYE---GSSEGSSPWGXXXXXXXXXXMV 117
            P+ LI+LVRWLSSMEN D   G+   S R        G   GSSPWG          ++
Sbjct: 60  IPLFLIVLVRWLSSMENPDALLGMFSSSRRTTYVSPGAGGDGGSSPWGVAALIVLLLVLL 119

Query: 118 QFQSNFLESW 127
           Q+QS+FLE W
Sbjct: 120 QYQSSFLEMW 129