Miyakogusa Predicted Gene

Lj3g3v3530630.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3530630.3 Non Chatacterized Hit- tr|F0ZRI4|F0ZRI4_DICPU
Putative uncharacterized protein OS=Dictyostelium
purp,31.02,2e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL;
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT,NULL;
TRAP_alpha,Tr,CUFF.46210.3
         (300 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16595.1 | Symbols:  | Translocon-associated protein (TRAP), ...   256   1e-68
AT2G21160.1 | Symbols:  | Translocon-associated protein (TRAP), ...   244   4e-65
AT2G21160.2 | Symbols:  | Translocon-associated protein (TRAP), ...   200   9e-52

>AT2G16595.1 | Symbols:  | Translocon-associated protein (TRAP),
           alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251
          Length = 251

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/226 (56%), Positives = 166/226 (73%), Gaps = 4/226 (1%)

Query: 65  QVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGETFTSAPGIETISVFPKNSARLVTAG 124
           +VA+CQSDS+   D+  E SD+G    DA++  G   TSAPGIET+ VFPKNSA+++ AG
Sbjct: 21  KVALCQSDSE---DSGFEVSDVGEEESDAEEVFGLELTSAPGIETLCVFPKNSAKIIKAG 77

Query: 125 EDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNLTAQIFNNGSVPSSAQATFPYL 184
            +TELLVG+KN+G+S++++VA++ S+HLPFD    VQNLTA  F+N SVP+SAQAT PY 
Sbjct: 78  VETELLVGMKNDGQSNVDIVAVKGSLHLPFDQNA-VQNLTALSFSNASVPTSAQATLPYA 136

Query: 185 FAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTIEVVEAGGFLSIESVFXXXXXXXXX 244
           FAVSKFLQ G FD VG+I+YEI+  PYQ+ F+NGTIEVVE G    +ESVF         
Sbjct: 137 FAVSKFLQAGAFDFVGTIIYEIDGKPYQSIFYNGTIEVVEDGPLFRMESVFLSGLLIFVI 196

Query: 245 XXXXXWIHGQIQNLSKKTKRAPKVEVGTRSIDASTDEWLQGTAYAQ 290
                +I   +++++KKTKRAPKVEVGT + DAS DEWL+GT+Y Q
Sbjct: 197 AFLAIYIQNVLKHMTKKTKRAPKVEVGTATKDASHDEWLEGTSYTQ 242


>AT2G21160.1 | Symbols:  | Translocon-associated protein (TRAP),
           alpha subunit | chr2:9068428-9070207 FORWARD LENGTH=258
          Length = 258

 Score =  244 bits (624), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 165/234 (70%), Gaps = 12/234 (5%)

Query: 65  QVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTSAPGIETISVFPKNS 117
           QVA CQSD++      D+     +VG++  D   E         +S PG+ET+ VFPKNS
Sbjct: 20  QVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNS 74

Query: 118 ARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNLTAQIFNNGSVPSSA 177
           A+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNLT    NN S+P+S 
Sbjct: 75  AKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSL 134

Query: 178 QATFPYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTIEVVEAGGFLSIESVFXX 237
           QATFPY+FAVS++LQPG FDLVG I+Y++E  PYQ+ F+NGTIEVVE+GG LS ESVF  
Sbjct: 135 QATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLL 194

Query: 238 XXXXXXXXXXXXWIHGQIQNLSKKTKRAPKVEVGTRSIDASTDEWLQGTAYAQS 291
                       W + Q+Q L+KKTK+  KVEVGTRS +AS DEWL+GT  A++
Sbjct: 195 TLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGTTLAKT 248


>AT2G21160.2 | Symbols:  | Translocon-associated protein (TRAP),
           alpha subunit | chr2:9068428-9070310 FORWARD LENGTH=188
          Length = 188

 Score =  200 bits (509), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 127/172 (73%), Gaps = 12/172 (6%)

Query: 65  QVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTSAPGIETISVFPKNS 117
           QVA CQSD++      D+     +VG++  D   E         +S PG+ET+ VFPKNS
Sbjct: 20  QVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNS 74

Query: 118 ARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNLTAQIFNNGSVPSSA 177
           A+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNLT    NN S+P+S 
Sbjct: 75  AKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSL 134

Query: 178 QATFPYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTIEVVEAGGFL 229
           QATFPY+FAVS++LQPG FDLVG I+Y++E  PYQ+ F+NGTIEVVE+GG L
Sbjct: 135 QATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGNL 186