Miyakogusa Predicted Gene

Lj3g3v3525970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3525970.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,87.74,0,seg,NULL; SKIP_SNW,SKI-interacting protein SKIP, SNW
domain; coiled-coil,NULL; NUCLEAR PROTEIN SKIP-,CUFF.45943.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77180.3 | Symbols: SKIP | chromatin protein family | chr1:28...   341   3e-94
AT1G77180.2 | Symbols: SKIP | chromatin protein family | chr1:28...   341   4e-94
AT1G77180.1 | Symbols: SKIP | chromatin protein family | chr1:28...   341   4e-94

>AT1G77180.3 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=511
          Length = 511

 Score =  341 bits (874), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 201/261 (77%), Gaps = 4/261 (1%)

Query: 1   MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEEKASAAIKQKPVPPYLKRAGFVPR 60
           M +L +L P PKS++TTYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXXXX--XXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKN 178
           IVY+Q KD+IPK LKN             +QKEI+ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 179 VAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXX 238
           +A+QS DS+YIKYKPSQQS+AFNSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 239 XXXXXXXXXXTVKDQQDWKIP 259
                     TVKDQQDWKIP
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIP 259


>AT1G77180.2 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  341 bits (874), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 201/261 (77%), Gaps = 4/261 (1%)

Query: 1   MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEEKASAAIKQKPVPPYLKRAGFVPR 60
           M +L +L P PKS++TTYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXXXX--XXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKN 178
           IVY+Q KD+IPK LKN             +QKEI+ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 179 VAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXX 238
           +A+QS DS+YIKYKPSQQS+AFNSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 239 XXXXXXXXXXTVKDQQDWKIP 259
                     TVKDQQDWKIP
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIP 259


>AT1G77180.1 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  341 bits (874), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 201/261 (77%), Gaps = 4/261 (1%)

Query: 1   MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEEKASAAIKQKPVPPYLKRAGFVPR 60
           M +L +L P PKS++TTYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+K G+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXXXX--XXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKN 178
           IVY+Q KD+IPK LKN             +QKEI+ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 179 VAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXX 238
           +A+QS DS+YIKYKPSQQS+AFNSGAKER+IRMVEMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 239 XXXXXXXXXXTVKDQQDWKIP 259
                     TVKDQQDWKIP
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIP 259