Miyakogusa Predicted Gene

Lj3g3v3523880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3523880.1 tr|I3SVH6|I3SVH6_LOTJA ATP-dependent Clp protease
proteolytic subunit OS=Lotus japonicus GN=clpP
PE=,99.38,0,CLP_protease,ClpP/TepA; ATP-DEPENDENT CLP PROTEASE
PROTEOLYTIC SUBUNIT,ClpP/TepA; seg,NULL; CLP_PROT,gene.g50976.t1.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP prote...   263   5e-71
AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded C...   130   3e-31
AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18...   108   2e-24
AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic ...   100   3e-22
AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteo...    99   8e-22
ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | ch...    96   8e-21
AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9...    95   2e-20
AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease prot...    92   1e-19
AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit ...    92   2e-19
AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    84   5e-17
AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    84   5e-17
AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    84   6e-17
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteo...    67   5e-12

>AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease
           P7 | chr5:7783811-7784826 FORWARD LENGTH=241
          Length = 241

 Score =  263 bits (671), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 135/160 (84%)

Query: 1   MVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLN 60
           MVIEHSSRGERAYDIFSRLLKERIICINGPI+DDT+HVVVAQLL+LESENPSKPI+MYLN
Sbjct: 35  MVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLN 94

Query: 61  SPGGAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQP 120
           SPGG VTAGLAIYDTMQYIRSPI+TIC                   RRSLPNA++MIHQP
Sbjct: 95  SPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQP 154

Query: 121 SGGYSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           SGGYSGQAKDI IHTKQIVRVWD LN LY KHTGQ ++++
Sbjct: 155 SGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVV 194


>AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP
           protease 5 | chr1:538000-539805 FORWARD LENGTH=298
          Length = 298

 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 93/151 (61%)

Query: 10  ERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAG 69
           ER   I S+L + RII   G + DD A+++VAQLL+L++ +P+K I MY+NSPGG+VTAG
Sbjct: 110 ERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAG 169

Query: 70  LAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAK 129
           +AI+DTM++IR  ++T+C                   R SLPN+ IMIHQP GG  G   
Sbjct: 170 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT 229

Query: 130 DIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           DI I   +++     LN   A HTGQS+E I
Sbjct: 230 DIDIQANEMLHHKANLNGYLAYHTGQSLEKI 260


>AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 |
           chr5:18396351-18397586 FORWARD LENGTH=292
          Length = 292

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 4   EHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 63
           E + RG  + D+   LL+ERI+ +   I D  A  +++QLL L++++P K I +++NSPG
Sbjct: 70  ESAIRGAES-DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPG 128

Query: 64  GAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGG 123
           G+++A +AIYD +Q +R+ ++TI                    R ++PN  IMIHQP GG
Sbjct: 129 GSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGG 188

Query: 124 YSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            SGQA D+ I  K+++   + +  + A  T +S E +
Sbjct: 189 ASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQV 225


>AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic
           subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309
          Length = 309

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 86/142 (60%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D  + LL++RI+ +   + D TA +V++QLL L++E+  + I +++NSPGG++TAG+ IY
Sbjct: 85  DTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIY 144

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAI 133
           D M+  ++ ++T+C                   R  +PN+ +MIHQP G   G+A +++I
Sbjct: 145 DAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSI 204

Query: 134 HTKQIVRVWDLLNVLYAKHTGQ 155
             ++++     LN ++++ TG+
Sbjct: 205 RIREMMYHKIKLNKIFSRITGK 226


>AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease
           proteolytic subunit 2 | chr1:4223099-4224954 FORWARD
           LENGTH=279
          Length = 279

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 83/147 (56%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           DI++ L +ER+I I   I ++ ++ ++A +L+L++ + S+ I MYLN PGG +T  LAIY
Sbjct: 89  DIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIY 148

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAI 133
           DTM+ ++SP+ T C                   R ++P + I +  P+G   GQA DI  
Sbjct: 149 DTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQN 208

Query: 134 HTKQIVRVWDLLNVLYAKHTGQSIELI 160
             K++ R+ D L    AK+TGQ  E +
Sbjct: 209 EAKELSRIRDYLFNELAKNTGQPAERV 235


>ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P |
           chrC:69910-71882 REVERSE LENGTH=196
          Length = 196

 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 85/148 (57%), Gaps = 1/148 (0%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           DI++RL +ER+  +   +  + ++ +++ +++L  E  +K + +++NSPGG V +G+AIY
Sbjct: 22  DIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIY 81

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQP-SGGYSGQAKDIA 132
           DTMQ++R  + TIC                   R + P+A +MIHQP S  Y  Q  +  
Sbjct: 82  DTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFI 141

Query: 133 IHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           +  ++++++ + +  +Y + TG+ I +I
Sbjct: 142 LEAEELLKLRETITRVYVQRTGKPIWVI 169


>AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 |
           chr4:9586740-9589297 REVERSE LENGTH=305
          Length = 305

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG--------GA 65
           D+ S L K RI+ +   +      +++A+ L+L+ E+  KPI +Y+NS G        G 
Sbjct: 105 DLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGY 164

Query: 66  VTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYS 125
            T   AIYD M Y++ PI T+C                   R +LP+++IMI QP   + 
Sbjct: 165 DTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQ 224

Query: 126 GQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
           GQA D+ I  K+I  +   +  LY+KH G+S E I+
Sbjct: 225 GQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIE 260


>AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease
           proteolytic subunit 6 | chr1:3967609-3969535 FORWARD
           LENGTH=271
          Length = 271

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D+ S L + RII I  PI+   A  V++QL+ L S +    I MYLN PGG+  + LAIY
Sbjct: 96  DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIY 155

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAI 133
           D M +I+  + T+                    R ++PN  +MIHQP  G  G  +D+  
Sbjct: 156 DCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 215

Query: 134 HTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
              + +     ++ +YA  TGQ +E +Q
Sbjct: 216 QVNEAIEARQKIDRMYAAFTGQPLEKVQ 243


>AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit 6 |
           chr1:3967609-3969535 FORWARD LENGTH=289
          Length = 289

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D+ S L + RII I  PI+   A  V++QL+ L S +    I MYLN PGG+  + LAIY
Sbjct: 114 DLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIY 173

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAI 133
           D M +I+  + T+                    R ++PN  +MIHQP  G  G  +D+  
Sbjct: 174 DCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRR 233

Query: 134 HTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
              + +     ++ +YA  TGQ +E +Q
Sbjct: 234 QVNEAIEARQKIDRMYAAFTGQPLEKVQ 261


>AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   EHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 63
           EH  R     D+ S LL  RI+ I  P+      +VVA+L++L+  +P +PI +Y+NS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 64  ---------GAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNAS 114
                    G  + G AIYD++  +++ ++T+C                   R  +P+A 
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 115 IMIHQPSGGYSG--QAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            MI QP    SG   A D+ I  K+++   D+L  L +KHTG S+E +
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETV 278


>AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   EHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 63
           EH  R     D+ S LL  RI+ I  P+      +VVA+L++L+  +P +PI +Y+NS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 64  ---------GAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNAS 114
                    G  + G AIYD++  +++ ++T+C                   R  +P+A 
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 115 IMIHQPSGGYSG--QAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            MI QP    SG   A D+ I  K+++   D+L  L +KHTG S+E +
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETV 278


>AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2939731-2942217
           REVERSE LENGTH=370
          Length = 370

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   EHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 63
           EH  R     D+ S LL  RI+ I  P+      +VVA+L++L+  +P +PI +Y+NS G
Sbjct: 112 EHRPRTPPP-DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTG 170

Query: 64  ---------GAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNAS 114
                    G  + G AIYD++  +++ ++T+C                   R  +P+A 
Sbjct: 171 TTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAK 230

Query: 115 IMIHQPSGGYSG--QAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            MI QP    SG   A D+ I  K+++   D+L  L +KHTG S+E +
Sbjct: 231 AMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETV 278


>AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease
           proteolytic subunit 1 | chr1:18501936-18504462 REVERSE
           LENGTH=387
          Length = 387

 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG---------G 64
           D+ S LL  RI  +  PI      ++VAQ ++L+ +NP+KPI +Y+NSPG         G
Sbjct: 171 DLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVG 230

Query: 65  AVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPS-GG 123
           + T   AI DT+ Y +S + TI                    R   P++S  ++ P    
Sbjct: 231 SETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNR 290

Query: 124 YSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            SG A D+ I  K++    +    L AK TG+S E I
Sbjct: 291 SSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQI 327