Miyakogusa Predicted Gene

Lj3g3v3523820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3523820.1 Non Chatacterized Hit- tr|B9FR06|B9FR06_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,92.31,0.000000000005,no description,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; Oligoxyloglucan
redu,gene.g50972.t1.1
         (405 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23120.1 | Symbols: HCF136 | photosystem II stability/assembl...   517   e-147

>AT5G23120.1 | Symbols: HCF136 | photosystem II stability/assembly
           factor, chloroplast (HCF136) | chr5:7778154-7780463
           FORWARD LENGTH=403
          Length = 403

 Score =  517 bits (1332), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 281/340 (82%), Gaps = 32/340 (9%)

Query: 66  RSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGKGTCHFTSNLVFSALNCISMVGLVG 125
           R+DE L+EWERV+LPIDPGVVLLDIAFVP++P+ G                         
Sbjct: 77  RADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRG------------------------- 111

Query: 126 FLLGTRQTLLETKDGGNTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSD 185
           FLLGTRQTLLETKDGG+TW PRSIPSAE+EDFNYRFNSISF+GKEGWI+GKP ILLYT+D
Sbjct: 112 FLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTAD 171

Query: 186 AGESWGRIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATL 245
           AGE+W RIPLS+QLPGDMV+IKAT DKSAEMVTDEGAIYVTSNRGYNWKAA+QETVSATL
Sbjct: 172 AGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATL 231

Query: 246 NRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQENIHIILAYWQPHN 305
           NRTVSSGISGASYYTGTF+ VNRSPDG YVAVSSRGNF+LTWEPGQ        YWQPHN
Sbjct: 232 NRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSRGNFFLTWEPGQ-------PYWQPHN 284

Query: 306 RAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSTD 365
           RAVARRIQNMGWRAD              SKGTGITEEFEEVPVQSRGFGILDVGYRS +
Sbjct: 285 RAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEE 344

Query: 366 EAWAAGGSGVLLRTNNGGKSWVRDKAADNIAANLYSVKSV 405
           EAWAAGGSG+LLRT NGGKSW RDKAADNIAANLY+VK V
Sbjct: 345 EAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFV 384