Miyakogusa Predicted Gene

Lj3g3v3513690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3513690.1 tr|G7JPH8|G7JPH8_MEDTR Photosystem II
stability/assembly factor HCF136 OS=Medicago truncatula
GN=MTR,87.63,0,seg,NULL; Oligoxyloglucan reducing end-specific
cellobiohydrolase,NULL; SUBFAMILY NOT NAMED,NULL; FA,CUFF.45963.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23120.1 | Symbols: HCF136 | photosystem II stability/assembl...   575   e-164

>AT5G23120.1 | Symbols: HCF136 | photosystem II stability/assembly
           factor, chloroplast (HCF136) | chr5:7778154-7780463
           FORWARD LENGTH=403
          Length = 403

 Score =  575 bits (1481), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/327 (85%), Positives = 301/327 (92%)

Query: 66  RSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGNTWGPRSIP 125
           R+DE L+EWERV+LPIDPGVVLLDIAFVP++P+ GFLLGTRQTLLETKDGG+TW PRSIP
Sbjct: 77  RADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIP 136

Query: 126 SAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPGDMVYIKATG 185
           SAE+EDFNYRFNSISF+GKEGWI+GKP ILLYT+DAGE+W RIPLS+QLPGDMV+IKAT 
Sbjct: 137 SAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATE 196

Query: 186 DKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSP 245
           DKSAEMVTDEGAIYVTSNRGYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ VNRSP
Sbjct: 197 DKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSP 256

Query: 246 DGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKG 305
           DG YVAVSSRGNF+LTWEPGQ YWQPHNRAVARRIQNMGWRAD              SKG
Sbjct: 257 DGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKG 316

Query: 306 TGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVRDKAADNIAA 365
           TGITEEFEEVPVQSRGFGILDVGYRS +EAWAAGGSG+LLRT NGGKSW RDKAADNIAA
Sbjct: 317 TGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAA 376

Query: 366 NLYSVKFIDDKKGFVLGNDGVLLRYLG 392
           NLY+VKF+DDKKGFVLGNDGVLLRY+G
Sbjct: 377 NLYAVKFVDDKKGFVLGNDGVLLRYVG 403