Miyakogusa Predicted Gene
- Lj3g3v3513520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3513520.1 tr|E9EB59|E9EB59_METAQ Cutinase negative acting
protein OS=Metarhizium acridum (strain CQMa 102)
GN=,35.58,8e-19,seg,NULL; RRM_1,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,R,CUFF.45946.1
(310 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 234 7e-62
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 227 8e-60
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 84 1e-16
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 68 7e-12
AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 8e-12
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 68 9e-12
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 4e-11
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 64 1e-10
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr... 63 3e-10
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 62 4e-10
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 62 4e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 62 4e-10
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 62 5e-10
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:... 62 6e-10
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 62 6e-10
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 61 9e-10
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 61 1e-09
AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G51730.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 59 5e-09
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 58 1e-08
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 57 1e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT5G10350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G10350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 57 2e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 56 3e-08
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 56 3e-08
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 56 3e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 56 3e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 56 4e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 56 4e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 56 4e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 56 4e-08
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 55 5e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 55 7e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 55 8e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 8e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 8e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 8e-08
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 54 9e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 54 1e-07
AT1G73490.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 54 1e-07
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 54 1e-07
AT1G73490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 54 2e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 54 2e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 53 2e-07
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT5G10350.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 52 7e-07
AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fam... 51 1e-06
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 50 1e-06
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 50 2e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 50 2e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 50 2e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 3e-06
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313... 49 6e-06
AT3G09160.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313... 48 7e-06
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 157/220 (71%), Gaps = 10/220 (4%)
Query: 22 TPQKKVKDVEMVDASSGKNA--PKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCG 79
TP+KK DVEMVDA NA PKTP QT+ GSKTLF GNLS+ + RSD+ENFFK+ G
Sbjct: 350 TPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQG-GSKTLFAGNLSYQIARSDIENFFKEAG 408
Query: 80 EVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNS 139
EVVDVRL++ +DG FKG+GH+EFA+ AQ ALE NG LL R VRLDLA ERG TP +
Sbjct: 409 EVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERG--TPRN 466
Query: 140 GAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNV 199
+N +KG QS+T++VRGF GED+IK L+ HF CGE+TR+ VP D E+G
Sbjct: 467 ---SNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGAS 523
Query: 200 KGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDN 239
+GFAY+D T+ ++AL+L S++GG + V+E++PRD+
Sbjct: 524 RGFAYIDL--TSGFDEALQLSGSEIGGGNIHVEESRPRDS 561
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 227 bits (578), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 160/225 (71%), Gaps = 17/225 (7%)
Query: 22 TPQKKVKDVEMVDA-SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGE 80
TP+KK DVEMVDA S PKTP+ GSKTLF NLSF+++R+DVENFFK+ GE
Sbjct: 264 TPKKKSSDVEMVDAEKSSAKQPKTPSTPAAG-GSKTLFAANLSFNIERADVENFFKEAGE 322
Query: 81 VVDVRLATD-EDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERG------ 133
VVDVR +T+ +DG F+GFGHVEFA++ AQ ALE++G LL R +RLD+A+ERG
Sbjct: 323 VVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERP 382
Query: 134 AYTPNSGAANNSFQKGGRG-QSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPK 192
A+TP SG +F+ GG G + +FV+GFD EDDIK++L+EHF SCGEI +SVP
Sbjct: 383 AFTPQSG----NFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPI 438
Query: 193 DFESGNVKGFAYLDFSDTNSVNKALELHDSDL-GGFTLAVDEAKP 236
D ++GN KG AYL+FS+ KALEL+ SD+ GGF L VDE +P
Sbjct: 439 DRDTGNSKGIAYLEFSEGK--EKALELNGSDMGGGFYLVVDEPRP 481
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
++P E +KTLFV NL S+Q SD+ NFFKD GEVV VRL + G+ G+G VEF
Sbjct: 235 ESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEF 294
Query: 103 ATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGF 162
A+A A+ AL NG L + LD A+ + P ++ + +++ ++
Sbjct: 295 ASANEAEKALVKNGEYLHNYKISLDGAKT-APHRPPKFCLDHKVWYEDYLRRESLLIKEV 353
Query: 163 DKFQGEDDIKSSLQE--------------------------HFGSCGEITRISVPKDFES 196
+ +G D+ L+E F GEI I + D
Sbjct: 354 EGVEGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVD-HM 412
Query: 197 GNVKGFAYLDFSDTNSVNKALE 218
G G +++F+ +N KAL+
Sbjct: 413 GEPVGCGFVEFNSSNEAEKALQ 434
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEY 114
+ + V NLS + + ++ FF +VV VRL + +G+ G+G VEFA+A A ALE
Sbjct: 158 EVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEE 217
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGF-DKFQGEDDIKS 173
E L L + +G +P G A + ++T+FV D Q D I
Sbjct: 218 KNGEYLHNHKILLM---KGHESP--GFAEEA------AITKTLFVANLRDSIQISDII-- 264
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDE 233
F GE+ + + + G G+ +++F+ N KAL + L + +++D
Sbjct: 265 ---NFFKDVGEVVHVRLIVN-SQGKHAGWGFVEFASANEAEKALVKNGEYLHNYKISLDG 320
Query: 234 AK 235
AK
Sbjct: 321 AK 322
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
KTLFV NL + + ++ +FFK GEVV V+L + G+ G G VEFA+ A+ AL+
Sbjct: 68 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQK 127
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSF----------------QKGGRGQSQTV 157
NG L + LD+A ++ Y P ++ ++ + +
Sbjct: 128 KNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVL 187
Query: 158 FVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL 217
FV DI + F GE+ I + + E +V G+ +++F+ + KAL
Sbjct: 188 FVANLSPQTKISDI----FDFFNCVGEVVSIRLMVNHEGKHV-GYGFVEFASADETKKAL 242
Query: 218 E------LHDSDL 224
E LHD +
Sbjct: 243 ENKNGEYLHDHKI 255
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 29/203 (14%)
Query: 43 KTPAAQTENEG--SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHV 100
+TP E G KTLFV +LS + + + NFFKD GEVV VRL + G+ G V
Sbjct: 294 ETPPEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFV 353
Query: 101 EFATAAAAQSALEY-NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFV 159
EF +A A+ ALE NG L + L++A+ Y P ++ + +++ +
Sbjct: 354 EFGSANEAKMALETKNGEYLNDCKIFLEVAK-MVPYPPPKYCIHHKVWYEDYLRRESLLI 412
Query: 160 RGFDKFQGEDDIKSSLQE------------------------HFGSCGEITRISVPKDFE 195
+ +G DD + ++E F E+ R+ + +
Sbjct: 413 EENETEEGLDDTPALVEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHR 472
Query: 196 SGNVKGFAYLDFSDTNSVNKALE 218
+V G +++F+ N KAL+
Sbjct: 473 GEHV-GCGFVEFASVNEAQKALQ 494
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
KTLFV NLS + S + FFKD EVV VRL + G G G VEFA+ AQ AL+
Sbjct: 436 KTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQK 495
Query: 114 YNGSELLQRPVRLDLA 129
NG L R + LD+
Sbjct: 496 MNGENLRSREIFLDVV 511
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 51 NEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQS 110
N + LFV NLS + SD+ +FF GEVV +RL + +G+ G+G VEFA+A +
Sbjct: 181 NSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKK 240
Query: 111 ALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG-----RGQS---------- 154
ALE NG L + +D+A+ Y P G N +K R +S
Sbjct: 241 ALENKNGEYLHDHKIFIDVAK-TAPYPP--GPKYNLVEKLCYEDYLRRESLPIDEDETPP 297
Query: 155 ---QTVFVRGFDKFQGEDDIKSSLQE---HFGSCGEITRISVPKDFESGNVKGFAYLDFS 208
+ V VR F K+ + F GE+ + + + +G G A+++F
Sbjct: 298 EFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVGCAFVEFG 356
Query: 209 DTNSVNKALE 218
N ALE
Sbjct: 357 SANEAKMALE 366
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
AQ E+ +T++V ++ SV + F CG+VVD R+ D + + F VEF+
Sbjct: 120 AQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFSDDQ 178
Query: 107 AAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGF 162
A+SAL G+ + PVR + + A P N +F + S+T++
Sbjct: 179 GARSALSLGGTMIGYYPVR--VLPSKTAILP----VNPTFLPRSEDEREMCSRTIYCTNV 232
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS 222
DK EDD+ + Q +CGE+TR+ + D + A+++F+ S AL
Sbjct: 233 DKNATEDDVNTFFQ---SACGEVTRLRLLGD--QVHSTRIAFVEFAMAESAVAALNCSGI 287
Query: 223 DLGGFTLAVDEAK 235
LG + V +K
Sbjct: 288 VLGSQPIRVSPSK 300
>AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27397266-27398273 FORWARD LENGTH=335
Length = 335
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 141 AANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVK 200
A ++ F G G+S +V GFD DDIKS+L ++F S GEITR+ VP +G
Sbjct: 222 AKDSLFSVGVNGRSFSV--TGFDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSL 279
Query: 201 GFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKP 236
G+AY+D + KALEL D+GG+ L V +A+P
Sbjct: 280 GYAYIDLKE--GAEKALELGRHDVGGWDLVVGKAEP 313
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
AQ E+ +T++V ++ SV + F CG+VVD R+ D + + F VEF+
Sbjct: 114 AQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFSDDQ 172
Query: 107 AAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGF 162
A+SAL G+ + PVR + + A P N +F + S+T++
Sbjct: 173 GARSALSLGGTMIGYYPVR--VLPSKTAILP----VNPTFLPRSEDEREMCSRTIYCTNV 226
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS 222
DK EDD+ + Q +CGE+TR+ + D + A+++F+ S AL
Sbjct: 227 DKNATEDDVNTFFQ---SACGEVTRLRLLGD--QVHSTRIAFVEFAMAESAVAALNCSGI 281
Query: 223 DLGGFTLAVDEAK 235
LG + V +K
Sbjct: 282 VLGSQPIRVSPSK 294
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 25/189 (13%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE 113
+ L V + + + ++++ G++ D + D GR +GFG+V FA+A A++AL+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 114 ---YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ G+ +L+ V++ +E + + +FV E D
Sbjct: 63 GEHFLGNRILE--VKVATPKEE--------------MRQPAKKVTRIFVARIPSSVSESD 106
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLA 230
+S HF GEIT + +PKD+ S +G ++ FS +SV +E DLGG T+A
Sbjct: 107 FRS----HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVA 161
Query: 231 VDEAKPRDN 239
VD A P+++
Sbjct: 162 VDRATPKED 170
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 25/189 (13%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE 113
+ L V + + + ++++ G++ D + D GR +GFG+V FA+A A++AL+
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 114 ---YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ G+ +L+ V++ +E + + +FV E D
Sbjct: 63 GEHFLGNRILE--VKVATPKEE--------------MRQPAKKVTRIFVARIPSSVSESD 106
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLA 230
+S HF GEIT + +PKD+ S +G ++ FS +SV +E DLGG T+A
Sbjct: 107 FRS----HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVA 161
Query: 231 VDEAKPRDN 239
VD A P+++
Sbjct: 162 VDRATPKED 170
>AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:869208-870855 REVERSE LENGTH=321
Length = 321
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 154 SQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSV 213
S + V G+D E ++ +L +HF SCGEIT+I VP+DF+ +K +++ +
Sbjct: 23 STAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAE 82
Query: 214 NKALELHDSDLGGFTLAVDEAKPR 237
+KAL+L +D+GG+T+ V + KP+
Sbjct: 83 DKALQLSGTDVGGWTVIV-KPKPK 105
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 39 KNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGF 97
K+ P +P EG T +L + +E F CGE+ V + TD E G K
Sbjct: 105 KHEPPSPITTISVEGYDT----SLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSV 160
Query: 98 GHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTV 157
+ A AL+ +G++++ V + + + NS A + + +
Sbjct: 161 AFLRIEGEGAEDKALQLSGTDVVGWTV---IVKPSEIFYDNSSRAPATTPEASK--IHRF 215
Query: 158 FVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL 217
V G+D E DI+ +L +HF SCGEI +++V + A++ V+KAL
Sbjct: 216 RVTGYDASLPEIDIQMALCKHFSSCGEIWQVTV--------LSSTAFVSLRGERCVDKAL 267
Query: 218 ELHDSDLGGFTLAVDE 233
EL ++G TL V+E
Sbjct: 268 ELSGCNMGERTLVVNE 283
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 68 RSDVENFFKDCGEVVDVRLATDEDGR-FKGFGHVEFATAAAAQSALEYNGSELLQRPVRL 126
R + F CGE+ + + D + K + A AL+ +G+++ V
Sbjct: 41 RLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTV-- 98
Query: 127 DLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEIT 186
+ + + + P S T+ V G+D + ++ L++HF SCGEI
Sbjct: 99 -IVKPKPKHEPPSPIT-------------TISVEGYDTSLQKYLLELILEKHFDSCGEIR 144
Query: 187 RISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+ VP D+E G +K A+L + +KAL+L +D+ G+T+ V
Sbjct: 145 HVYVPTDYERGVLKSVAFLRIEGEGAEDKALQLSGTDVVGWTVIV 189
>AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873804-875025 REVERSE LENGTH=226
Length = 226
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKA 216
+ V G+D E +K L++HF SCG+IT I VP+DFE G +K A++ KA
Sbjct: 31 ISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGGEEKA 90
Query: 217 LELHDSDLGGFTLAVDEA 234
L L +D GG+T V A
Sbjct: 91 LLLSGTDAGGWTAIVKPA 108
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 20/169 (11%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G+ +F+ NL S+ + + F G +V ++A D G+ KG+G V++A +AQ A+
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181
Query: 113 E-YNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 169
E NG L + V + L R+ T N N V+V+ + +D
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN------------VYVKNLAESTTDD 229
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
D+K++ FG G+IT V KD E G KGF +++F + + +A+E
Sbjct: 230 DLKNA----FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 40 NAPKTPAAQTENE-GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GF 97
+AP T T + G+ +L+VG+L F+V S + + F G VV VR+ D R G+
Sbjct: 20 SAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGY 79
Query: 98 GHVEFATAA-AAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQT 156
G+V F AA++ E N L +P+R+ + R SGA N
Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRV-MYSHRDPSVRRSGAGN------------- 125
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKA 216
+F++ D E +L + F S G I V D SG KG+ ++ +++ S KA
Sbjct: 126 IFIKNLD----ESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180
Query: 217 LE 218
+E
Sbjct: 181 IE 182
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 32/202 (15%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALE-Y 114
LFVGNL F+V + + F+ G V V + D+ GR +GFG V ++ + ++A + +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQT------------------ 156
NG EL RP+R++ P + F +G R +
Sbjct: 153 NGYELDGRPLRVNAG-------PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNR 205
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKA 216
V+V G DD+ +L+ F G++ V D +SG KGF ++ + + V A
Sbjct: 206 VYVGNLS--WGVDDM--ALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
Query: 217 LE-LHDSDLGGFTLAVDEAKPR 237
++ L +DL G + V EA+ R
Sbjct: 262 IKSLDGADLDGRQIRVSEAEAR 283
>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
Length = 227
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 46 AAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATA 105
AA+ E S++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF
Sbjct: 94 AAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV 153
Query: 106 AAAQSALEYNGSELLQRPVRLDLAR 130
A Q++L N SEL R +++ R
Sbjct: 154 EAVQNSLILNESELHGRQIKVSAKR 178
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+Q+HF SCG + R+++ D + G KGFAY++F + +V +L L++S+L G + V
Sbjct: 119 VQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 174
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 45 PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFA 103
P A E + +T+F ++ DV FF G+V DVR+ D R +G G+VEF
Sbjct: 173 PEADPERD-QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 231
Query: 104 TAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG--RGQSQTVFVRG 161
+ A+ +G LL +PV + + ++ AA + G G ++ ++V
Sbjct: 232 DTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGN 291
Query: 162 FDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELH 220
EDD L++ F S G + + VP+D E+G KGF ++ F+ AL L+
Sbjct: 292 LHINMSEDD----LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLN 345
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G++ L+VGNL ++ D+ F+ G V V++ DE G KGFG V+FA A++AL
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 113 EYNGS-ELLQRPVRL 126
NG E+ R +++
Sbjct: 343 NLNGQLEIAGRAIKV 357
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 45 PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFA 103
P A E + +T+F ++ DV FF G+V DVR+ D R +G G+VEF
Sbjct: 222 PEADPERD-QRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 280
Query: 104 TAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG--RGQSQTVFVRG 161
+ A+ +G LL +PV + + ++ AA + G G ++ ++V
Sbjct: 281 DTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGN 340
Query: 162 FDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELH 220
EDD L++ F S G + + VP+D E+G KGF ++ F+ AL L+
Sbjct: 341 LHINMSEDD----LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLN 394
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G++ L+VGNL ++ D+ F+ G V V++ DE G KGFG V+FA A++AL
Sbjct: 332 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 391
Query: 113 EYNGS-ELLQRPVRL 126
NG E+ R +++
Sbjct: 392 NLNGQLEIAGRAIKV 406
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 45 PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDG-RFKGFGHVEFA 103
P A E + +T+F + DV FF G+V DVRL D + R KG G++EF
Sbjct: 159 PEADPERD-QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 217
Query: 104 TAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFD 163
+ A+ +G L +PV + + + + A +NS GG G + G
Sbjct: 218 DVMSVPMAIALSGQLFLGQPVMV-----KPSEAEKNLAQSNSTTVGGTGPADRKLYVGNL 272
Query: 164 KFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDF 207
F + L++ F + G + + +P D E+G KGF ++ F
Sbjct: 273 HFNMSE---LQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779760-20781241 FORWARD LENGTH=265
Length = 265
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 46 AAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATA 105
AA+ E S++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF
Sbjct: 132 AAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV 191
Query: 106 AAAQSALEYNGSELLQRPVRLDLAR 130
A Q++L N SEL R +++ R
Sbjct: 192 EAVQNSLILNESELHGRQIKVSAKR 216
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+Q+HF SCG + R+++ D + G KGFAY++F + +V +L L++S+L G + V
Sbjct: 157 VQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 212
>AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=189
Length = 189
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSA-LE 113
KTLF+ NL + + NFF+D GEVV VRL D G+ G G VEFA+A A+ A LE
Sbjct: 40 KTLFIANLPLKSEMPHIINFFRDVGEVVSVRLIVDHRGKHVGCGFVEFASAYKAKKAPLE 99
Query: 114 -YNGSELLQRPVRLDLA 129
N L R V LD+A
Sbjct: 100 KKNLRRLRNRYVVLDVA 116
>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
chr5:8345402-8347776 REVERSE LENGTH=320
Length = 320
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 24/208 (11%)
Query: 38 GKNAP----KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGR 93
GK P KT Q E+ +T++V ++ V + + F CG+VVD R+ D
Sbjct: 116 GKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSI 175
Query: 94 FKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGA-----YTPNSGAANNSFQK 148
+ F +EF A A+SAL +G+ P+R+ +++ A + P S + +K
Sbjct: 176 LR-FAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQS---KDELEK 231
Query: 149 GGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGS-CGEITRISVPKDFESGNVKGFAYLDF 207
G+ TV+ DK + K L+ F + CGE+ + + DF A+++F
Sbjct: 232 CGK----TVYCTNIDK----EVTKMELENFFKTVCGEVHHLRLLGDFYHQT--RIAFVEF 281
Query: 208 SDTNSVNKALELHDSDLGGFTLAVDEAK 235
S AL LG + V +K
Sbjct: 282 KLAESAISALNCSGVVLGELPIRVSPSK 309
>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779346-20781241 FORWARD LENGTH=142
Length = 142
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 46 AAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATA 105
AA+ E S++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF
Sbjct: 9 AAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEV 68
Query: 106 AAAQSALEYNGSELLQRPVRLDLAR 130
A Q++L N SEL R +++ R
Sbjct: 69 EAVQNSLILNESELHGRQIKVSAKR 93
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEA 234
+Q+HF SCG + R+++ D + G KGFAY++F + +V +L L++S+L G + V
Sbjct: 34 VQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAK 92
Query: 235 K 235
+
Sbjct: 93 R 93
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 8/193 (4%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
+T AQ E+ +T++V +L V + F CG+VVD R+ D + + F +EF
Sbjct: 161 RTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FAFIEF 219
Query: 103 ATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGF 162
A +AL +G+ L PV+ + + A P + + ++T++
Sbjct: 220 TDEEGAMTALNLSGTMLGFYPVK--VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNI 277
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS 222
DK + D+K + CGE+ R+ + D++ A+++F S AL
Sbjct: 278 DKKVTQSDVKIFFESF---CGEVYRLRLLGDYQHST--RIAFVEFVMAESAIAALNCSGV 332
Query: 223 DLGGFTLAVDEAK 235
LG + V +K
Sbjct: 333 VLGSLPIRVSPSK 345
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
AQ E+ +T++V ++ SV + F +CG+VVD R+ D + F VEFA
Sbjct: 133 AQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEFADDQ 191
Query: 107 AAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGF 162
A AL G+ L PVR + + A P N +F + ++T++
Sbjct: 192 GAHEALSLGGTMLGFYPVR--VLPSKTAILP----VNPTFLPRSEDEREMCTRTIYCTNI 245
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKD-FESGNVKGFAYLDFSDTNSVNKALELHD 221
DK + D+++ + +CGE+TR+ + D S + A+++F+ +S AL
Sbjct: 246 DKKVSQADVRNFFE---SACGEVTRLRLLGDQLHSTRI---AFVEFALADSALSALNCSG 299
Query: 222 SDLGGFTLAVDEAK 235
+G + V +K
Sbjct: 300 MVVGSQPIRVSPSK 313
>AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:26080501-26082984 REVERSE LENGTH=220
Length = 220
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 33 VDASSGKNAPKTPAAQT---ENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD 89
V+ G P + AA E ++++FVGN+ ++ +V+ F+ CG V V + TD
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD 126
Query: 90 EDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRL 126
+ G+ KGF +VEF A Q AL+ N SEL R +++
Sbjct: 127 KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 11/112 (9%)
Query: 122 RPVRLDLARERGAYTPNSGAANNSFQKGGRGQ--SQTVFVRGFDKFQGEDDIKSSLQEHF 179
R ++ + +E GA P S AAN + G+ + +++VFV D +++ Q+HF
Sbjct: 61 REMQAKVEKEMGAQDPASIAANQA----GKEEVDARSVFVGNVDYACTPEEV----QQHF 112
Query: 180 GSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+CG + R+++ D + G KGFAY++F + +V +AL+L++S+L G L V
Sbjct: 113 QTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALEYN 115
LFVG +S+ N+F GEVVD + TD G +GFG V FA +A A+ LE +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSL 175
+ R V L RG + A + +++ +FV G ED++K+
Sbjct: 128 -HVIDDRKVDLKRTLPRGDKDTDIKAVS---------KTRKIFVGGLPPLLEEDELKN-- 175
Query: 176 QEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL---ELHDSDLGGFTLAVD 232
+F G+I + D +G +GF ++ F +SV++ ++H +LG + +
Sbjct: 176 --YFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVH--ELGDKQVEIK 231
Query: 233 EAKPR 237
A+P+
Sbjct: 232 RAEPK 236
>AT5G51730.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21011418-21013365 FORWARD LENGTH=317
Length = 317
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 131 ERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISV 190
ER + P ++GGR T+FV+G+D GE+D+ +L EHF CG I+RI
Sbjct: 176 ERALFIP---------KQGGRYDCGTIFVKGYDSSLGENDLARALLEHFSPCGMISRI-- 224
Query: 191 PKDFESGNVKGFAYLD---FSDTNSVNKALELHDSDLGGFTLAVDEAKPRD 238
+ N G A L AL+L+ SD+GG L V +A RD
Sbjct: 225 ---YFQTNDAGEAVLKHVFIVMLQGTEDALKLNGSDMGGCNLEVHDATERD 272
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 42 PKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHV 100
PK E LFVGNLS++V + F++CG+VV R+ D D GR +G+G V
Sbjct: 164 PKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Query: 101 EFATAAAAQSALE-YNGSELLQRPVRLDLAR 130
+++ A ++ALE +G EL R +R++LA+
Sbjct: 224 CYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALE-Y 114
LF+G LS+SV +++ F GEV +VR+A D+ GR +GFG V+FA A SA +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 115 NGSELLQRPVRLDLARER 132
+G LL RP+R+ A ER
Sbjct: 103 DGKGLLGRPLRISFALER 120
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 49 TENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAA 108
T G +F+ NL S+ + F G ++ ++A D GR KG+G V+F +A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 109 QSALE-YNGSELLQRPV-------RLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVR 160
Q+A++ NG + + V R + AR+ TP + V+V+
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTP---------------RFTNVYVK 234
Query: 161 GFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-L 219
K GED+++ + FG G I+ V +D +SGN + F +++F T + A+E +
Sbjct: 235 NLPKEIGEDELRKT----FGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 220 HDSDLGGFTLAVDEAK 235
+ LG L V A+
Sbjct: 290 NGISLGDDVLYVGRAQ 305
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 22/199 (11%)
Query: 21 KTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGE 80
+ P + V S +P A QT S L+ G+L V + + + FK
Sbjct: 17 QVPSPTAQTSVQVPVSIPLPSPVVVADQTHPNSS--LYAGDLDPKVTEAHLFDLFKHVAN 74
Query: 81 VVDVRLATDEDGRFKGFGHVEFATAAAAQSALE-YNGSELLQRPVRLDLARERGAYTPNS 139
VV VR+ D++ R G+ ++ F+ A A+E N + L RP+R+ L+ R T S
Sbjct: 75 VVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLS-NRDPSTRLS 133
Query: 140 GAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNV 199
G N +F++ D D K +L E F S G I V D +G
Sbjct: 134 GKGN-------------IFIKNLD---ASIDNK-ALFETFSSFGTILSCKVAMDV-TGRS 175
Query: 200 KGFAYLDFSDTNSVNKALE 218
KG+ ++ F S A++
Sbjct: 176 KGYGFVQFEKEESAQAAID 194
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
+T AQ E+ +T++V +L V + F CG+VVD R+ D + + F +EF
Sbjct: 161 RTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FAFIEF 219
Query: 103 ATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGF 162
A +AL +G+ L PV+ + + A P + + ++T++
Sbjct: 220 TDEEGAMTALNLSGTMLGFYPVK--VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNI 277
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS 222
DK + D+K + CGE+ R+ + D++ A+++F S AL
Sbjct: 278 DKKVTQSDVKIFFESF---CGEVYRLRLLGDYQHST--RIAFVEFVMAESAIAALNCSGV 332
Query: 223 DLGGFTL 229
LG +
Sbjct: 333 VLGSLPI 339
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 42 PKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVE 101
P+T AQ E +T++V ++ V + F G+VVD R+ D + + F +E
Sbjct: 137 PRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR-FAFIE 195
Query: 102 FATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRG 161
F A++AL +G+ L PV+ + + A P + + ++T++
Sbjct: 196 FTDEVGARTALNLSGTMLGFYPVK--VMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 253
Query: 162 FDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD 221
DK + DIK + CGE+ R+ + D+ GF ++F S AL
Sbjct: 254 IDKKLTQTDIKLFFES---VCGEVYRLRLLGDYHHPTRIGF--VEFVMAESAIAALNCSG 308
Query: 222 SDLGGFTLAVDEAK 235
LG + V +K
Sbjct: 309 VLLGSLPIRVSPSK 322
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSAL-EY 114
LF+G LSF + F CG+VV+ ++ D R KGFG V FA+A AQ AL E+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 115 NGSELLQRPVRLDLARER 132
NG +L R + +D A+ +
Sbjct: 96 NGQQLNGRTIFVDYAKAK 113
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQS 110
E +TL++G+L + V + + + F GE+V V++ ++ G+ +G+G +EF + AAA+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 111 ALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 169
L+ YNG+++ + L + A+ S QK G ++FV +
Sbjct: 81 TLQTYNGTQMPGTELTFRL----------NWASFGSGQKVDAGPDHSIFVGDLAPDVTDY 130
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFT 228
++ + + H+ S + V D +G KG+ ++ F++ + N+A+ E++
Sbjct: 131 LLQETFRVHYSS---VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 229 LAVDEAKPRDN 239
+ + A P+ N
Sbjct: 188 MRISAATPKKN 198
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQS 110
E +TL++G+L + V + + + F GE+V V++ ++ G+ +G+G +EF + AAA+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 111 ALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 169
L+ YNG+++ + L + A+ S QK G ++FV +
Sbjct: 81 TLQTYNGTQMPGTELTFRL----------NWASFGSGQKVDAGPDHSIFVGDLAPDVTDY 130
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFT 228
++ + + H+ S + V D +G KG+ ++ F++ + N+A+ E++
Sbjct: 131 LLQETFRVHYSS---VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 229 LAVDEAKPRDN 239
+ + A P+ N
Sbjct: 188 MRISAATPKKN 198
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 26 KVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVR 85
K+ + S N P T + S LFVG LS+ S ++ F GEV +
Sbjct: 6 KLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEAT 65
Query: 86 LATD-EDGRFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
+ D E GR +GFG V F+ +A +A+ E +G EL R +R++LA ER
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 26 KVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVR 85
K+ + S N P T + S LFVG LS+ S ++ F GEV +
Sbjct: 6 KLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEAT 65
Query: 86 LATD-EDGRFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
+ D E GR +GFG V F+ +A +A+ E +G EL R +R++LA ER
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>AT5G10350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3255808-3257746 REVERSE LENGTH=202
Length = 202
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+++++VGN+ ++ +V+ F+ CG V V + D+ G+ KGF +VEF A Q AL+
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ 147
Query: 114 YNGSELLQRPVRLDLAR 130
N SEL R +++ R
Sbjct: 148 LNESELHGRQLKVSPKR 164
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 122 RPVRLDLARERGAYT-PNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFG 180
R ++ + +E GA P S AAN ++ +++V+V D +++ Q HF
Sbjct: 57 REMQAKVEKEMGATQDPASMAANQEGKE--EVDARSVYVGNVDYACTPEEV----QLHFQ 110
Query: 181 SCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+CG + R+++ D + G KGFAY++F + +V +AL+L++S+L G L V
Sbjct: 111 TCGTVNRVTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>AT5G10350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3255674-3257746 REVERSE LENGTH=217
Length = 217
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+++++VGN+ ++ +V+ F+ CG V V + D+ G+ KGF +VEF A Q AL+
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ 147
Query: 114 YNGSELLQRPVRLDLAR 130
N SEL R +++ R
Sbjct: 148 LNESELHGRQLKVSPKR 164
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
+Q HF +CG + R+++ D + G KGFAY++F + +V +AL+L++S+L G L V
Sbjct: 105 VQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 17/186 (9%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G +FV NL SV + +++ FK G +V ++AT EDG+ +G+G V+F AA +A+
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIK 172
+ S ++ ++ Y +K R + + + + K D +
Sbjct: 170 QTLNSTIVA---------DKEIYV------GKFMKKTDRVKPEEKYTNLYMKNLDADVSE 214
Query: 173 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAV 231
L+E F G+I +++ KD E+ +G+A+++F + +A E ++ + G L V
Sbjct: 215 DLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Query: 232 DEAKPR 237
A+ +
Sbjct: 274 GRAQKK 279
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL 112
S LF+G +++S+ + F GEVVD R+ D E GR +GFG V F ++ AA SA+
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 113 E-YNGSELLQRPVRLDLARER 132
+ +G +L R V+++ A +R
Sbjct: 99 QALDGRDLHGRVVKVNYANDR 119
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSAL-EY 114
LFVG +S+ + F + GEV + D+ GR +GFG V F+ + L E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQT--VFVRGFDKFQGEDDIK 172
+ + + V+ ++RE + +G N S GG ++T +FV G +++ +
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 173 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVD 232
++F G +T +++ D + +GF ++ F ++V+ L DL G + V
Sbjct: 128 ----QYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 233 EAKPRD 238
A P+D
Sbjct: 184 RALPKD 189
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 49 TENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAA 108
T G +F+ NL S+ + F G ++ ++A D GR KG+G V+F A
Sbjct: 140 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 199
Query: 109 QSALE-YNGSELLQRPV-------RLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVR 160
Q+A++ NG L + V R D AR P SF V+V+
Sbjct: 200 QAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP-------SF--------TNVYVK 244
Query: 161 GFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-L 219
K +D++K + FG G+I+ V KD +SGN + F +++F + A+E +
Sbjct: 245 NLPKEITDDELKKT----FGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 220 HDSDLGGFTLAVDEAK 235
+ LG L V A+
Sbjct: 300 NGISLGEDVLYVGRAQ 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 56 TLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE-Y 114
+L+VG+L SV S + + F V ++R+ D R G+ +V FA A A+E
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSS 174
N + + RP+R+ L+ R T SG N VF++ D D K +
Sbjct: 120 NYAPIRDRPIRIMLS-NRDPSTRLSGKGN-------------VFIKNLD---ASIDNK-A 161
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L E F S G I V D G KG+ ++ F + A++
Sbjct: 162 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAID 204
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 49 TENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAA 108
T G +F+ NL S+ + F G ++ ++A D GR KG+G V+F A
Sbjct: 140 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 199
Query: 109 QSALE-YNGSELLQRPV-------RLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVR 160
Q+A++ NG L + V R D AR P SF V+V+
Sbjct: 200 QAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP-------SF--------TNVYVK 244
Query: 161 GFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-L 219
K +D++K + FG G+I+ V KD +SGN + F +++F + A+E +
Sbjct: 245 NLPKEITDDELKKT----FGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 220 HDSDLGGFTLAVDEAK 235
+ LG L V A+
Sbjct: 300 NGISLGEDVLYVGRAQ 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 56 TLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE-Y 114
+L+VG+L SV S + + F V ++R+ D R G+ +V FA A A+E
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSS 174
N + + RP+R+ L+ R T SG N VF++ D D K +
Sbjct: 120 NYAPIRDRPIRIMLS-NRDPSTRLSGKGN-------------VFIKNLD---ASIDNK-A 161
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L E F S G I V D G KG+ ++ F + A++
Sbjct: 162 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAID 204
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 34 DASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDG 92
+ SS N P T + S LF+G LS+ + + + F G+VVD ++ D E G
Sbjct: 14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
Query: 93 RFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
R +GFG V F AA +A+ E +G EL R +R++ A +R
Sbjct: 74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 45 PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVV---------DVRLATDE-DGRF 94
P A E + +T+F ++ DV FF G+V DVR+ D R
Sbjct: 202 PEADPERD-QRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRS 260
Query: 95 KGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG--RG 152
+G G+VEF + A+ +G LL +PV + + ++ AA + G G
Sbjct: 261 RGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG 320
Query: 153 QSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNS 212
++ ++V EDD L++ F S G + + VP+D E+G KGF ++ F+
Sbjct: 321 GARRLYVGNLHINMSEDD----LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLED 375
Query: 213 VNKALELH 220
AL L+
Sbjct: 376 ARNALNLN 383
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G++ L+VGNL ++ D+ F+ G V V++ DE G KGFG V+FA A++AL
Sbjct: 321 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 380
Query: 113 EYNGS-ELLQRPVRL 126
NG E+ R +++
Sbjct: 381 NLNGQLEIAGRAIKV 395
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 34 DASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDG 92
+ SS N P T + S LF+G LS+ + + + F G+VVD ++ D E G
Sbjct: 14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
Query: 93 RFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
R +GFG V F AA +A+ E +G EL R +R++ A +R
Sbjct: 74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 34 DASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDG 92
+ SS N P T + S LF+G LS+ + + + F G+VVD ++ D E G
Sbjct: 14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
Query: 93 RFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
R +GFG V F AA +A+ E +G EL R +R++ A +R
Sbjct: 74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 34 DASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDG 92
+ SS N P T + S LF+G LS+ + + + F G+VVD ++ D E G
Sbjct: 14 NISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
Query: 93 RFKGFGHVEFATAAAAQSAL-EYNGSELLQRPVRLDLARER 132
R +GFG V F AA +A+ E +G EL R +R++ A +R
Sbjct: 74 RSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQS 110
+G +++GNL++ D+ F DC + VRL + E G FKG+ HV+F + +
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 111 ALEYNGSELLQRPVRLDLA-RERGAYTPNSGAANNS 145
AL+ + + RPV++ A ++R A G NN+
Sbjct: 318 ALKLDQQVICGRPVKICCALKDRPATDHTPGETNNA 353
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLAT-DEDGRFKGFGHVEFATAAAAQSALEYN 115
L+VG + + ++ ++F+ CG ++ V EDG F G + F T A+ AL ++
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFD 222
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSL 175
+ + R L + + TP+ S G + + R + D + +
Sbjct: 223 RAAMGDR--YLTIQQYVKTTTPSIPRRKTS--SGFAPEMVDGYNRVYIGNLAWDTTERDI 278
Query: 176 QEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
++ F C I + + K+ E+G KG+A++DF D+ SV AL+L + G + +
Sbjct: 279 RKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKI 333
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ + + +F + GEV+ V + ++ GR +GFG V F+ A L+ +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ-D 66
Query: 116 GSELLQRPVRLDLARERGAYTP--NSGAANNS--FQKGGRGQSQTVFVRGFDKFQGEDDI 171
+ R V + A R +P SG N S F G +++ +FV G D+
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 172 KSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
++ +F + G ++ + D + +GF ++ F +SV+ L DL G + V
Sbjct: 127 RA----YFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 232 DEAKPRD 238
A P+D
Sbjct: 183 KRALPKD 189
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSAL 112
S LF+G +S+ + ++F GEV++ + D GR +GFG V FA A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGA----ANNSFQKG-GRGQSQTVFVRGFDKFQG 167
LL+ + + + A + +N+S Q G S+ +FV G
Sbjct: 65 ------LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGF 227
E + K ++F G IT + V D + +GF ++ + +V+K L+ +L G
Sbjct: 119 EAEFK----KYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Query: 228 TLAVDEAKPRD 238
+ V A P+D
Sbjct: 175 MVEVKLAVPKD 185
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSAL 112
S LF+G +S+ + ++F GEV++ + D GR +GFG V FA A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGA----ANNSFQKG-GRGQSQTVFVRGFDKFQG 167
LL+ + + + A + +N+S Q G S+ +FV G
Sbjct: 65 ------LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGF 227
E + K ++F G IT + V D + +GF ++ + +V+K L+ +L G
Sbjct: 119 EAEFK----KYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Query: 228 TLAVDEAKPRD 238
+ V A P+D
Sbjct: 175 MVEVKLAVPKD 185
>AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21801221-21802546 FORWARD LENGTH=251
Length = 251
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDT---NSV 213
+ V G+D E +K +L +HF SCG+I I VP+DF+ +K ++ F + V
Sbjct: 23 ISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFKKRILKSPLFIIFHAKEGESPV 82
Query: 214 NKALELHDSDLGGFTLAV 231
+KALEL +D+GG+ + V
Sbjct: 83 DKALELSGTDVGGWNVVV 100
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G LFV NL SV + F CG +V ++ATD G+ +G+G V+F T +A++A+
Sbjct: 132 GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 113 E------YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQ 166
E N ++ P RE S A F V+V+ +
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERE-------SAADKMKF--------TNVYVKNLSEAT 236
Query: 167 GEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+D++K++ FG G I+ V +D + G + F +++F + +A+E
Sbjct: 237 TDDELKTT----FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE 283
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 56 TLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGHVEFATAAAAQSALE- 113
+L+VG+L F+V S + ++F + +VV VR+ D G+G+V ++ A+ A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
N S L + +R+ + + SG N +FV+ DK D K
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSAR-RSGVGN-------------LFVKNLDK---SVDNK- 148
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+L E F CG I V D G +G+ ++ F +S A+E
Sbjct: 149 TLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIE 192
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 20/193 (10%)
Query: 56 TLFVGNLSFSVQRSDVENFFKDC-GEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL- 112
T+FVG+L+ V + FK V ++ D GR KG+G V FA + A+
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQS----QTVFVRGFDKFQGE 168
E NG RP+R A + T + N+ +G G+S T+FV D+ E
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT--QGNSGESDPTNTTIFVGAVDQSVTE 291
Query: 169 DDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGF 227
DD+KS FG GE+ + +P G ++ +++ +AL L+ + LGG
Sbjct: 292 DDLKSV----FGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSVLNGTQLGGQ 341
Query: 228 TLAVDEAKPRDNQ 240
++ + + N+
Sbjct: 342 SIRLSWGRSPSNK 354
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL-EY 114
L+VGNLS+ V +EN F + G+VV+ R+ D D GR KGFG V +++ Q A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 115 NGSELLQRPVRLDLARER 132
NG++L R +R+ A R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL-EY 114
L+VGNLS+ V +EN F + G+VV+ R+ D D GR KGFG V +++ Q A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 115 NGSELLQRPVRLDLARER 132
NG++L R +R+ A R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL-EY 114
L+VGNLS+ V +EN F + G+VV+ R+ D D GR KGFG V +++ Q A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 115 NGSELLQRPVRLDLARER 132
NG++L R +R+ A R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 8/188 (4%)
Query: 42 PKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVE 101
P+T AQ E +T++V ++ V + F G+VVD R+ D + + F +E
Sbjct: 137 PRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR-FAFIE 195
Query: 102 FATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRG 161
F A++AL +G+ L PV+ + + A P + + ++T++
Sbjct: 196 FTDEVGARTALNLSGTMLGFYPVK--VMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 253
Query: 162 FDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD 221
DK + DIK + CGE+ R+ + D+ GF ++F S AL
Sbjct: 254 IDKKLTQTDIKLFFES---VCGEVYRLRLLGDYHHPTRIGF--VEFVMAESAIAALNCSG 308
Query: 222 SDLGGFTL 229
LG +
Sbjct: 309 VLLGSLPI 316
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL-EY 114
L+VGNLS+ V +EN F + G+VV+ R+ D D GR KGFG V +++ Q A+
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 115 NGSELLQRPVRLDLARER 132
NG++L R +R+ A R
Sbjct: 340 NGADLDGRQIRVSEAEAR 357
>AT1G73490.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27633496-27634867 REVERSE LENGTH=260
Length = 260
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKA 216
+FV+GFD +IK++L HF SCG++ I VP +G G+A++D + K
Sbjct: 120 LFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMKNE---TKG 176
Query: 217 LELHDSDLGG 226
L L+ S LGG
Sbjct: 177 LTLNGSHLGG 186
>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
+T AQ ++ +T++V ++ V ++ F +CG+VVD R+ D + + F +EF
Sbjct: 157 RTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR-FAFIEF 215
Query: 103 ATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ----TVF 158
A++AL +G+ L P L + + A P N +F + + TV+
Sbjct: 216 TNEEGARAALSMSGTVLGFYP--LKVLPSKTAIAP----VNPTFLPRSEDEREMCVRTVY 269
Query: 159 VRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
DK + D+K + CGE+ R+ + D+ + A+++F+ S AL
Sbjct: 270 CTNIDKRITQIDLKGFFEML---CGEVHRLRL-GDYH--HQTRIAFVEFAMAESAIAALH 323
Query: 219 LHDSDLGGFTLAVDEAK 235
LG + V +K
Sbjct: 324 CSGIVLGALPIRVSPSK 340
>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
+T AQ ++ +T++V ++ V ++ F +CG+VVD R+ D + + F +EF
Sbjct: 157 RTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR-FAFIEF 215
Query: 103 ATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ----TVF 158
A++AL +G+ L P L + + A P N +F + + TV+
Sbjct: 216 TNEEGARAALSMSGTVLGFYP--LKVLPSKTAIAP----VNPTFLPRSEDEREMCVRTVY 269
Query: 159 VRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
DK + D+K + CGE+ R+ + D+ + A+++F+ S AL
Sbjct: 270 CTNIDKRITQIDLKGFFEML---CGEVHRLRL-GDYH--HQTRIAFVEFAMAESAIAALH 323
Query: 219 LHDSDLGGFTLAVDEAK 235
LG + V +K
Sbjct: 324 CSGIVLGALPIRVSPSK 340
>AT1G73490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27633496-27634867 REVERSE LENGTH=259
Length = 259
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKA 216
+FV+GFD +IK++L HF SCG++ I VP +G G+A++D + K
Sbjct: 119 LFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMKNE---TKG 175
Query: 217 LELHDSDLGG 226
L L+ S LGG
Sbjct: 176 LTLNGSHLGG 185
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGHVEFATAAAAQS 110
+G+ +L+VG+L +V S + F G+VV VR+ D R G+G+V +AT A
Sbjct: 42 QGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASR 101
Query: 111 AL-EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 169
AL E N L R +R+ + + S +K G G +F++ DK
Sbjct: 102 ALNELNFMALNGRAIRVMYS-----------VRDPSLRKSGVG---NIFIKNLDK---SI 144
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
D K +L E F + G I V D SG KG+ ++ + + A++
Sbjct: 145 DHK-ALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G +F+ NL S+ + F G ++ ++A D G+ KG+G V++ T AAQ A+
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAI 190
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIK 172
+ LL ++ Y G + Q+ G+ + F + K E
Sbjct: 191 DKLNGMLLN---------DKQVYV---GPFVHKLQRDPSGE-KVKFTNVYVKNLSESLSD 237
Query: 173 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L + FG G T + +D E G KGF +++F +++ +A++
Sbjct: 238 EELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGHVEFATAAAAQS 110
+G+ +L+VG+L +V S + F G+VV VR+ D R G+G+V +AT A
Sbjct: 42 QGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASR 101
Query: 111 AL-EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 169
AL E N L R +R+ + + S +K G G +F++ DK
Sbjct: 102 ALNELNFMALNGRAIRVMYS-----------VRDPSLRKSGVG---NIFIKNLDK---SI 144
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
D K +L E F + G I V D SG KG+ ++ + + A++
Sbjct: 145 DHK-ALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G +F+ NL S+ + F G ++ ++A D G+ KG+G V++ T AAQ A+
Sbjct: 131 GVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAI 190
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIK 172
+ LL ++ Y G + Q+ G+ + F + K E
Sbjct: 191 DKLNGMLLN---------DKQVYV---GPFVHKLQRDPSGE-KVKFTNVYVKNLSESLSD 237
Query: 173 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L + FG G T + +D E G KGF +++F +++ +A++
Sbjct: 238 EELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL 112
S +FVG +S+S + F GEVVD ++ D E GR +GF V F + A +A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 113 EYNGSELLQRPVRLDLARE 131
+ +G +L R +R++ A E
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 8/185 (4%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ ++ +F GEV++ + D GR +GFG V FA A A+ +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQ--KGGRGQSQTVFVRGFDKFQGEDDIKS 173
+ R V A R + + ++S Q GG G+++ +FV G E D K+
Sbjct: 68 -HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDE 233
E FG+ T + V D + +GF ++ + +V K L +L G + V
Sbjct: 127 YF-EQFGTT---TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
Query: 234 AKPRD 238
A P++
Sbjct: 183 AVPKE 187
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL--E 113
LF+G +S+ ++ +F GEV++ + D GR +GFG V FA A A+ + +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+N L + + R+ S +++ GG G+++ +FV G E D K+
Sbjct: 68 HNIDGRLVE-AKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDE 233
E FG+ T + V D + +GF ++ + +V K L +L G + V
Sbjct: 127 YF-EQFGTT---TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
Query: 234 AKPRD 238
A P++
Sbjct: 183 AVPKE 187
>AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=423
Length = 423
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 49 TENEGSKTLFVGNLS--FSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
E KTLFV NL S+QR + FF+D EVV VRL D+ G+ G G+ EFA+A
Sbjct: 291 VEEARKKTLFVTNLPPRTSIQR--MLYFFQDF-EVVRVRLIVDQSGKHMGCGYFEFASAN 347
Query: 107 AAQSALEY-NGSELLQRPVRLDLA 129
A+ ALE NG L + L+LA
Sbjct: 348 EAEKALEQRNGKSLRYHKIFLELA 371
>AT5G10350.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3255674-3256463 REVERSE LENGTH=128
Length = 128
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEA 234
+Q HF +CG + R+++ D + G KGFAY++F + +V +AL+L++S+L G L V
Sbjct: 16 VQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPK 74
Query: 235 K 235
+
Sbjct: 75 R 75
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFAT---AAAAQ 109
G L+V NL S+ S +E F G ++ ++ +E+G+ KGFG V+F T A +A+
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKV-VEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 110 SALEYNGSELLQRPVRLDLAR-----ERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDK 164
SAL +GS + + +L +A+ ER A N + N V+V+ +
Sbjct: 169 SAL--HGSMVYGK--KLFVAKFINKDERAAMAGNQDSTN-------------VYVKNLIE 211
Query: 165 FQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSD 223
+D L F G ++ + V +D G +GF +++F + + KA+E L
Sbjct: 212 TVTDD----CLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQ 266
Query: 224 LGGFTLAVDEAKPRD 238
LG L V +A +D
Sbjct: 267 LGSKKLFVGKALKKD 281
>AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:4014455-4017675 FORWARD LENGTH=638
Length = 638
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 23 PQKKVKDVEMVDASSGKNAPKTPAAQ--TENEGSKTLFVGNLSFSVQRSDVENFFKDCGE 80
P VK+ ++++ K+ P T + E+ S+T+FV N+ F + + F GE
Sbjct: 450 PAASVKE----ESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGE 505
Query: 81 VVDVRLATD-EDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNS 139
V+ + TD G+ G ++EF AA++AL +G+ + R +++ +G+ N
Sbjct: 506 VLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI----VKGSNGQNQ 561
Query: 140 GAANN-SFQKGGRGQSQTVFVRG 161
AA++ S+ +GGR + RG
Sbjct: 562 EAASSMSWSRGGRFTRAPSYFRG 584
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSAL 112
S LF+G +S+ + ++F GEV++ + D GR +GFG V FA A+ +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 113 EY----NGSELLQRPVRLDLAR-----------ERGAYTPNS-----GAANNSFQKG-GR 151
+G L+ V L R E P +N+S Q G
Sbjct: 65 LLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGP 124
Query: 152 GQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTN 211
S+ +FV G E + K ++F G IT + V D + +GF ++ +
Sbjct: 125 SNSKKIFVGGLASSVTEAEFK----KYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180
Query: 212 SVNKALELHDSDLGGFTLAVDEAKPRD 238
+V+K L+ +L G + V A P+D
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKD 207
>AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
| chr3:18103272-18110216 FORWARD LENGTH=881
Length = 881
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEY 114
KTL+V L + D+ +FFKD G+VV V+L T +G G VEFA+A A+ AL+
Sbjct: 564 KTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDM 623
Query: 115 NGSELL 120
E L
Sbjct: 624 KNGEYL 629
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCG--EVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
LFVGNL + V + F+ G E+ +V D D + +GFG V +T A+ A+E
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEK 173
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQT-VFVRGFDKFQGE--DD 170
+N E+ R + ++ A RG+ R + Q V+ F + G D
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGS----------------RPERQPRVYDAAFRIYVGNLPWD 217
Query: 171 IKS-SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-SDLGGFT 228
+ S L+ F G++ V D E+G +GF ++ S+ N VN A+ D +L G
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRA 277
Query: 229 LAVDEAKPR 237
+ V+ A+ R
Sbjct: 278 IKVNVAEER 286
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAA-------- 107
LF+G +S+ + ++F + G+VV+ + D GR +GFG + FA
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 108 ---------AQSALEYNGSELLQR---PVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ 155
A+ A+ + ++L+R P+ L S GG G+++
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHL-----------------MSPVHGGGGRTK 110
Query: 156 TVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNK 215
+FV G E++ K+ +F G I + V D + +GF ++ F ++V++
Sbjct: 111 KIFVGGLPSSITEEEFKN----YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 216 ALELHDSDLGGFTLAVDEAKPRD 238
L +L G + V A P++
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKE 189
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAA-------- 107
LF+G +S+ + ++F + G+VV+ + D GR +GFG + FA
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 108 ---------AQSALEYNGSELLQR---PVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ 155
A+ A+ + ++L+R P+ L S GG G+++
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHL-----------------MSPVHGGGGRTK 110
Query: 156 TVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNK 215
+FV G E++ K+ +F G I + V D + +GF ++ F ++V++
Sbjct: 111 KIFVGGLPSSITEEEFKN----YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 216 ALELHDSDLGGFTLAVDEAKPRD 238
L +L G + V A P++
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKE 189
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAA-------- 107
LF+G +S+ + ++F + G+VV+ + D GR +GFG + FA
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 108 ---------AQSALEYNGSELLQR---PVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ 155
A+ A+ + ++L+R P+ L S GG G+++
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHL-----------------MSPVHGGGGRTK 110
Query: 156 TVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNK 215
+FV G E++ K+ +F G I + V D + +GF ++ F ++V++
Sbjct: 111 KIFVGGLPSSITEEEFKN----YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 216 ALELHDSDLGGFTLAVDEAKPRD 238
L +L G + V A P++
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKE 189
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAA-------- 107
LF+G +S+ + ++F + G+VV+ + D GR +GFG + FA
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 108 ---------AQSALEYNGSELLQR---PVRLDLARERGAYTPNSGAANNSFQKGGRGQSQ 155
A+ A+ + ++L+R P+ L S GG G+++
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHL-----------------MSPVHGGGGRTK 110
Query: 156 TVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNK 215
+FV G E++ K+ +F G I + V D + +GF ++ F ++V++
Sbjct: 111 KIFVGGLPSSITEEEFKN----YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 216 ALELHDSDLGGFTLAVDEAKPRD 238
L +L G + V A P++
Sbjct: 167 VLHKTFHELNGKLVEVKRAVPKE 189
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCG--EVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
LFVGNL++ V + F+ G E+ +V + E + +GFG V ++ A++A+E
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGE---DD 170
+N +L R + ++ A RG+ ++ V+ F + G D
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPE---------------RAPRVYEPAFRVYVGNLPWDV 255
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-SDLGGFTL 229
L++ F G++ V D E+G +GF ++ SD + +N+A+ D +L G +
Sbjct: 256 DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
Query: 230 AVDEAKPR 237
V+ A+ R
Sbjct: 316 RVNVAEER 323
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 43 KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEF 102
KT Q N K LFV NL +S+ +D+ F CG V +V + +DG+ +GF V
Sbjct: 84 KTEETQNSNLKRK-LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTM 142
Query: 103 ATAAAAQSALE-YNGSELLQRPVRLDLARERGAYTPNS 139
A+ AQ+A++ ++ ++ R + + AR TP S
Sbjct: 143 ASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 180
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G +FV NL S+ + + F G+V+ ++A D G KG+G V+F + + +A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTAC 88
Query: 113 EYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIK 172
++ L++ N F G+ VF + K E
Sbjct: 89 NFHNGTLIR----------------NQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATD 132
Query: 173 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+ L+ FG GEIT V KD E G + F +++F + A+E
Sbjct: 133 ADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALE-Y 114
L+VGNL +++ S++ F + G VVDV++ D+ R +GFG V + A+ A++ +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQ----GEDD 170
N S++ R V+++ P G N + R +++ +V K G +
Sbjct: 178 NSSQIGGRTVKVNFPE-----VPR-GGENEVMRTKIRDNNRS-YVDSPHKVYAGNLGWNL 230
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFTL 229
L++ FG + V + +G +GF ++ F +V AL ++ ++ G L
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Query: 230 AVDEAKPRD 238
++ A R+
Sbjct: 291 RLNLASERE 299
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 58 FVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL-EYN 115
FVG L+++ D++ F G+V+D ++ D E GR +GFG V F A + A+ E N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 116 GSELLQRPVRLDLARERGA 134
G EL R + ++ A+ RG+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 57 LFVGNLSFSVQRSDVENFF-KDCGEVVDVRLATDEDG-RFKGFGHVEFATAAAAQSAL-E 113
LFV NL+F + ++ FF D G VV + E+ R G+G V F T A++AL E
Sbjct: 131 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 190
Query: 114 YNGSELLQRPVRL 126
+ G + L RP+RL
Sbjct: 191 FQGKDFLGRPIRL 203
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 57 LFVGNLSFSVQRSDVENFF-KDCGEVVDVRLATDEDG-RFKGFGHVEFATAAAAQSAL-E 113
LFV NL+F + ++ FF D G VV + E+ R G+G V F T A++AL E
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 114 YNGSELLQRPVRL 126
+ G + L RP+RL
Sbjct: 251 FQGKDFLGRPIRL 263
>AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 |
chr4:15787313-15789683 FORWARD LENGTH=433
Length = 433
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 50 ENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLA--TDEDGRFKGFGHVEFATAAA 107
E ++T+ S+ V+R DVE+FF G+V VR+ E F G VEF T
Sbjct: 111 EQLNARTVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEED 170
Query: 108 AQSALEYN----GSELLQRPVR-LDLARER-----GAYTPNSGAANNSFQKGG 150
AQ+ ++ N G EL +P + D RE+ Y P G+AN QK G
Sbjct: 171 AQNVMKQNLVFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSAN---QKNG 220
>AT3G09160.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2806262-2806912 REVERSE LENGTH=132
Length = 132
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 155 QTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVN 214
+ + V G+D + ++S L++ F CGEIT + +P+ S ++ A++ F + +
Sbjct: 23 ERISVTGYDIELPREHVESELKKLFSPCGEITDVHIPETRNS-SLWSHAFIYFVGEGTAD 81
Query: 215 KALELHDSDLGGFTLAVDEAKP 236
KAL+L+ SD+GG+T+ EA P
Sbjct: 82 KALQLNGSDMGGWTVDA-EADP 102
>AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 |
chr4:15787313-15789498 FORWARD LENGTH=404
Length = 404
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 50 ENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLA--TDEDGRFKGFGHVEFATAAA 107
E ++T+ S+ V+R DVE+FF G+V VR+ E F G VEF T
Sbjct: 111 EQLNARTVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEED 170
Query: 108 AQSALEYN----GSELLQRPVR-LDLARER-----GAYTPNSGAANNSFQKGG 150
AQ+ ++ N G EL +P + D RE+ Y P G+AN QK G
Sbjct: 171 AQNVMKQNLVFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSAN---QKNG 220