Miyakogusa Predicted Gene

Lj3g3v3511390.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3511390.2 CUFF.45907.2
         (521 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing pr...   425   e-119
AT1G44910.2 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing pr...    67   4e-11
AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing pr...    66   5e-11
AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing pr...    60   5e-09

>AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing
           protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835
          Length = 835

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/495 (46%), Positives = 296/495 (59%), Gaps = 19/495 (3%)

Query: 5   RPPFFQYPASFPGPFPFQARGITPSAVSVPDSYXXXXXXXXXXXXXXXXXXXNHQPVGTA 64
           R PF  +P +FPG +PF  RGI+P+   +P S                      QP  + 
Sbjct: 167 RAPFLSHPTTFPGSYPFPVRGISPN---LPYSGSHPLGASPMGSVGNVHALPGRQPDISP 223

Query: 65  GLQPDDKRNVTKNEDA--ANDQLDAWTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQ 122
           G + ++   +     +    ++LDAWTAHK+EAGV+YYYN++TG+STY+KP GF GEP +
Sbjct: 224 GRKTEELSGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDK 283

Query: 123 VSVQPTPASMVDLPGTDWMLISTSDGKKYYYNNQTKTSCWQIPNEVAELKKKQDGDVTKD 182
           V VQP P SM  LPGTDW L+ST+DGKKYYYNN+TK S WQIP EV +  KK + +   +
Sbjct: 284 VPVQPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDFGKKLE-ERAME 342

Query: 183 HLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQSSPSALDLIKKKLQDXXX 242
            + SVP+ + L+++GS + +L+APAI+ GGRDAA+LK ++  SS  ALDL+KKKL D   
Sbjct: 343 SVASVPSAD-LTEKGSDLTSLSAPAISNGGRDAASLKTTNFGSS--ALDLVKKKLHDSGM 399

Query: 243 XXXXXXXXXXXXQTGSETNGSKATETTAXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXX 302
                          SE N  K TE T                     +           
Sbjct: 400 PVSSTIT--------SEANSGKTTEVTPSGESGNSTGKVKDAPGAGA-LSDSSSDSEDED 450

Query: 303 XXXXXXXCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTX 362
                  C  QFKEMLKERG+APFSKWEKELPKI+FDPRFKAIPS+S RRSLFE YVKT 
Sbjct: 451 SGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTR 510

Query: 363 XXXXXXXXXXXXXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDRKEREHL 422
                          IEGF+QLLD+AS DI+Q TDY+ F+KKWGND RFE ++RKERE L
Sbjct: 511 AEEERREKRAAHKAAIEGFRQLLDDASTDIDQHTDYRAFKKKWGNDLRFEAIERKEREGL 570

Query: 423 LNERVLPLXXXXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRVKESLRDDPRYKSVR 482
           LNERVL L                     ML+E+ +I+ NS WS+VK+SLR++PRY+SV 
Sbjct: 571 LNERVLSLKRSAEQKAQEIRAAAASDFKTMLRER-EISINSHWSKVKDSLRNEPRYRSVA 629

Query: 483 HEDREVMFNEYISEL 497
           HEDREV + EYI+EL
Sbjct: 630 HEDREVFYYEYIAEL 644


>AT1G44910.2 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing
           protein 40A | chr1:16975930-16982647 FORWARD LENGTH=926
          Length = 926

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 314 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTXXXXXXXXXXXX 373
           FK +L+   V     WE+ L +IV D R+ A+ +   R+  F  Y+              
Sbjct: 411 FKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRR 470

Query: 374 XXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDR-KEREHLLNERVLPLXX 432
                E F ++L+E  E+++ S  +      + ND RF+ +DR ++RE L +  ++ L  
Sbjct: 471 QKKAREEFVKMLEEC-EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELER 529

Query: 433 XXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRVKESLRDDPRYKSVRHEDREVMFNE 492
                               L+    I + ++W ++++ L DD R   +   DR + F E
Sbjct: 530 KEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEE 589

Query: 493 YI 494
           YI
Sbjct: 590 YI 591



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 88  WTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSD 147
           W  H +  G  YYYN  T +S ++KP              TP    D   T W   +T +
Sbjct: 190 WQEHTSADGRKYYYNKRTKQSNWEKPLELM----------TPLERADA-STVWKEFTTPE 238

Query: 148 GKKYYYNNQTKTSCWQIPNEV 168
           GKKYYYN  TK S W IP ++
Sbjct: 239 GKKYYYNKVTKESKWTIPEDL 259


>AT1G44910.1 | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing
           protein 40A | chr1:16975930-16982818 FORWARD LENGTH=958
          Length = 958

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 314 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTXXXXXXXXXXXX 373
           FK +L+   V     WE+ L +IV D R+ A+ +   R+  F  Y+              
Sbjct: 411 FKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRR 470

Query: 374 XXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDR-KEREHLLNERVLPLXX 432
                E F ++L+E  E+++ S  +      + ND RF+ +DR ++RE L +  ++ L  
Sbjct: 471 QKKAREEFVKMLEEC-EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELER 529

Query: 433 XXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRVKESLRDDPRYKSVRHEDREVMFNE 492
                               L+    I + ++W ++++ L DD R   +   DR + F E
Sbjct: 530 KEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEE 589

Query: 493 YI 494
           YI
Sbjct: 590 YI 591



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 88  WTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSD 147
           W  H +  G  YYYN  T +S ++KP              TP    D   T W   +T +
Sbjct: 190 WQEHTSADGRKYYYNKRTKQSNWEKPLELM----------TPLERADA-STVWKEFTTPE 238

Query: 148 GKKYYYNNQTKTSCWQIPNEV 168
           GKKYYYN  TK S W IP ++
Sbjct: 239 GKKYYYNKVTKESKWTIPEDL 259


>AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing
           protein 40B | chr3:6828242-6836582 REVERSE LENGTH=992
          Length = 992

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 2/185 (1%)

Query: 314 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTXXXXXXXXXXXX 373
           FK +LK   V     WE+ + +I+ D R+ A+ +   R+  F  ++              
Sbjct: 457 FKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGERKQAFNEFLLQTKRAAEEERLAR 516

Query: 374 XXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDR-KEREHLLNERVLPLXX 432
                E FK++L+E  E +  ST +      + +D RF+ L+R K+R ++  + V  L  
Sbjct: 517 QKKLYEDFKRMLEECVE-LTPSTRWSKTVTMFEDDERFKALEREKDRRNIFEDHVSELKE 575

Query: 433 XXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRVKESLRDDPRYKSVRHEDREVMFNE 492
                               L+    I  NS+W +V++ L  D R   +   D+  +F E
Sbjct: 576 KGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQE 635

Query: 493 YISEL 497
           Y+ +L
Sbjct: 636 YLRDL 640



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 85  LDAWTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLIS 144
           L  W  H +  G  Y++N  T +ST++KP        +   +           TDW   S
Sbjct: 206 LTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADAR-----------TDWKEHS 254

Query: 145 TSDGKKYYYNNQTKTSCWQIPNEV 168
           + DG+KYYYN  TK S W +P E+
Sbjct: 255 SPDGRKYYYNKITKQSTWTMPEEM 278