Miyakogusa Predicted Gene

Lj3g3v3510290.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3510290.3 CUFF.45912.3
         (467 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19895.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   619   e-177
AT5G05230.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   138   7e-33
AT3G12940.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-depend...   134   1e-31
AT2G40640.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   128   8e-30
AT2G40640.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   113   4e-25
AT2G40640.3 | Symbols:  | RING/U-box superfamily protein | chr2:...    64   2e-10

>AT3G19895.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:6917530-6921211 REVERSE LENGTH=554
          Length = 554

 Score =  619 bits (1597), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/461 (65%), Positives = 364/461 (78%), Gaps = 12/461 (2%)

Query: 1   MEALSASLTRHNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYTYRAGRA 60
           +EALS SL R+NA++IE+GSEDTALMRCGLE ARL+FR+R+    GKG+RG+  YRAGR+
Sbjct: 83  VEALSVSLMRYNASVIEIGSEDTALMRCGLEAARLYFRTRSLTVSGKGNRGLSMYRAGRS 142

Query: 61  LEDWDSSPPCMADIFRCMGKVSRSALCAIARILRLRSDVFTQLLDDAPLPANEVSSSVLV 120
           +ED DSSPPCMA+IFRC+GKV+R+AL AIAR LRLRSDVF  +LDD PL  NEVSSSVL+
Sbjct: 143 VEDLDSSPPCMAEIFRCLGKVARAALSAIARHLRLRSDVFNHMLDDFPLAPNEVSSSVLL 202

Query: 121 VTYSHASFQN-----GGGKPTMNGEVEKGLLTLISSDTPGLQVCDPNGRWYAADSGSGPG 175
            +Y+HAS QN     GGG  +   EVEKGLLTL  SD  G+QVCDPNGRWY AD+G G G
Sbjct: 203 ASYAHASIQNGKHASGGGNLSAKIEVEKGLLTLFCSDGTGIQVCDPNGRWYTADNGCGVG 262

Query: 176 DLLLITGKALSHATAGLRPAASYRASPDYFPGPNSGRRTCLAYRLMPQGNAILDCSPIAA 235
           DLLLITGKALSHATAGLRPAASYR + D+    ++  R  LA+RLMP+ NAILDCSPI A
Sbjct: 263 DLLLITGKALSHATAGLRPAASYRTTTDHLSATDTRGRASLAFRLMPKSNAILDCSPIEA 322

Query: 236 AGHAIPHSYGPISVSQFMDDLAAE-ELIDNRCDIADVAQSNVSKEPSLRSVLSDPLSGAF 294
           AGH IP SY P+SVSQFMD+L AE + + N     +V + +V KEPSLRSVLSDP+SGAF
Sbjct: 323 AGHVIPQSYVPVSVSQFMDNLLAENDTLVNPPVKTNVPRDDVCKEPSLRSVLSDPISGAF 382

Query: 295 LEDAMLVSCGHSFGGALLRRVIETSRCTLCNVDVETGSLIPNXXXXXXXXXIKHEDDRRL 354
           LEDAM+VSCGHSFGG +LRRV+E SRCTLCN ++E+GSL+PN         IK +DD+RL
Sbjct: 383 LEDAMVVSCGHSFGGLMLRRVLEMSRCTLCNTEIESGSLVPNHALRAAASAIKQQDDKRL 442

Query: 355 FRNASLRKRRKEMGDQMDTMRRVNRENGEFAAADGLQRRVQYPFSVNEKVIIKGNRRTPE 414
           F NA++R+RRKEM DQMD       ENG+ A  DG+ R V YPF+VNEKV+IKGNRRTPE
Sbjct: 443 FHNAAMRRRRKEMSDQMDV------ENGDPATDDGMHRVVHYPFAVNEKVLIKGNRRTPE 496

Query: 415 KLVGKEAVITSQCLNGWYSLKIIGTEEIVRLQYRSLRKLPN 455
           K VGKEA++TSQCLNGWY LKI+ + + VRLQYRSL+K+ N
Sbjct: 497 KFVGKEAIVTSQCLNGWYLLKIVESGDNVRLQYRSLKKMVN 537


>AT5G05230.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:1551593-1553543 FORWARD LENGTH=363
          Length = 363

 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 11/205 (5%)

Query: 263 DNRCDIA---DVAQSNVSKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGALLRRVIETS 319
           DN CD +   D++ S+ +   SLR++LSDP +G+ + DAM++ CGH+FG   + +V +  
Sbjct: 160 DNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMK 219

Query: 320 RCTLCNVDVETGSLIPNXXXXXXXXXIKHEDDRRLFRNASLRKRRKEMGDQMDTMRRVNR 379
            C  C+  V   S+ PN            E++ +   +    KR++E  DQ      V  
Sbjct: 220 ACCTCSQPVSEDSITPNLTLRVAVQAFCREENSQ---SNHPSKRKREGFDQERRAFGVTN 276

Query: 380 ENGEFAAADGLQRRVQYPFSVNEKVIIKGNRRTPEKLVGKEAVITSQCLNGWYSLKIIGT 439
            +G         +   +PF+V ++VIIKGN+RTP + VG+EAV+T+QCLNGWY +K +  
Sbjct: 277 HSGR-----SRNKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDN 331

Query: 440 EEIVRLQYRSLRKLPNSPTTEPIQN 464
            E V+LQYRSL K P  P+ +   N
Sbjct: 332 AESVKLQYRSLAKAPEDPSAKATPN 356


>AT3G12940.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-dependent
           oxygenase superfamily protein | chr3:4130242-4131912
           REVERSE LENGTH=474
          Length = 474

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 144/301 (47%), Gaps = 40/301 (13%)

Query: 4   LSASLTRHNAALIELGSEDTALMRCGLEGARLFFRSR----------------------A 41
           LS SL +++AA+I+  + D AL+R GL+ ARL+F  R                       
Sbjct: 36  LSQSLAQYSAAIIQFPASDGALLRSGLDSARLYFHQRDSYPATNNMIHTNDSQEWCKTSG 95

Query: 42  HLGVGKGSRGVYTYRAGRALEDWDSS---PPC-MADIFRCMGKVSRSALCAIARILRLRS 97
           +    +  +  Y YR G    +  +S   PP  + DIF  +GK +R  L AI   L LRS
Sbjct: 96  YYADPQSWQESYEYRPGLTPTEPSNSMEFPPAGLPDIFALLGKAARVVLDAIGFYLNLRS 155

Query: 98  DVFTQLLDDAPLPANEVSSSVL-VVTYSHASFQNGGGKPTMNGE-----------VEKGL 145
             FT++LD+ PL   EVSSSVL V  Y+  SF           E           ++K L
Sbjct: 156 CPFTEILDNVPLRNCEVSSSVLSVCCYARPSFHGAQHHSLTEDEQLILYSDHDHQLDKSL 215

Query: 146 LTLISSDTPGLQVCDPNGRWYAADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYF 205
           ++ + SD  GL + D +G+W   D   GP + ++  G AL  ATAG    A +R   +  
Sbjct: 216 ISFVKSDKAGLHIRDMHGQWILVDVDLGPQEAVVYPGLALYQATAGYVSPAVHRTDLNSL 275

Query: 206 PGPNSGRRTCLAYRLMPQGNAILDCSPIAAAGHAIPHSYG-PISVSQFMDDLAAEELIDN 264
            G   GR + LA++LMP+    L CS + AAGH +   +  P+SV  FM    + + + N
Sbjct: 276 QGSIEGRFS-LAFKLMPKSMTNLSCSEMRAAGHGVEAQFQLPVSVDDFMQRSHSNDELFN 334

Query: 265 R 265
           R
Sbjct: 335 R 335


>AT2G40640.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961323-16963198 REVERSE LENGTH=383
          Length = 383

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 8/190 (4%)

Query: 271 VAQSNVSKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGALLRRVIETSRCTLCNVDVET 330
           V  ++VS   SL+++LSDP++GA + DA ++ CGHSFG   L+ V +   C  C+     
Sbjct: 191 VTTTSVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLE 250

Query: 331 GSLIPNXXXXXXXXXIKHEDDRRLFRNASLRKRRKEMGDQMDTMRRVNRENGEFAAADGL 390
           GS  PN          + E+D          KRRKE  DQ  +    N            
Sbjct: 251 GSEKPNLSLRIVVHAFRQEEDSDHIHTL---KRRKERSDQKRSFCIPN-----ITETPKS 302

Query: 391 QRRVQYPFSVNEKVIIKGNRRTPEKLVGKEAVITSQCLNGWYSLKIIGTEEIVRLQYRSL 450
            R +Q+PFS+ + +II+GN+RTP + VG+ AVI +QCLNGWY +K +   E ++LQ+ SL
Sbjct: 303 SRGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSL 362

Query: 451 RKLPNSPTTE 460
            K+ ++ +T+
Sbjct: 363 AKISDNSSTK 372


>AT2G40640.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961488-16963198 REVERSE LENGTH=352
          Length = 352

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 271 VAQSNVSKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGALLRRVIETSRCTLCNVDVET 330
           V  ++VS   SL+++LSDP++GA + DA ++ CGHSFG   L+ V +   C  C+     
Sbjct: 191 VTTTSVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLE 250

Query: 331 GSLIPNXXXXXXXXXIKHEDDRRLFRNASLRKRRKEMGDQMDTMRRVNRENGEFAAADGL 390
           GS  PN          + E+D          KRRKE  DQ  +    N            
Sbjct: 251 GSEKPNLSLRIVVHAFRQEEDSDHIHTL---KRRKERSDQKRSFCIPN-----ITETPKS 302

Query: 391 QRRVQYPFSVNEKVIIKGNRRTPEKLVGKEAVITSQCLNGWYSL 434
            R +Q+PFS+ + +II+GN+RTP + VG+ AVI +QCLNGW SL
Sbjct: 303 SRGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWLSL 346


>AT2G40640.3 | Symbols:  | RING/U-box superfamily protein |
           chr2:16961685-16963198 REVERSE LENGTH=314
          Length = 314

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%)

Query: 271 VAQSNVSKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGALLRRVIETSRCTLCNVDVET 330
           V  ++VS   SL+++LSDP++GA + DA ++ CGHSFG   L+ V +   C  C+     
Sbjct: 191 VTTTSVSSWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLE 250

Query: 331 GSLIPNXXXXXXXXXIKHEDDRRLFRNASLRKRRKEM 367
           GS  PN          + E+D         RK R+E+
Sbjct: 251 GSEKPNLSLRIVVHAFRQEEDSDHIHTLKRRKERREV 287