Miyakogusa Predicted Gene

Lj3g3v3510270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3510270.1 tr|C1N998|C1N998_MICPC XRCC2 DNA recombinase
OS=Micromonas pusilla (strain CCMP1545) GN=XRCC2 PE=4
S,32.14,0.000000000003,no description,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; seg,NULL; X-RAY
REPA,gene.g50924.t1.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64520.2 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair ...   152   1e-37
AT5G64520.1 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair ...   152   1e-37
AT5G64520.3 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair ...   146   9e-36

>AT5G64520.2 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair
           cross complementing 2 (XRCC2) | chr5:25788069-25790242
           FORWARD LENGTH=342
          Length = 342

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 123/232 (53%), Gaps = 66/232 (28%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
           AGNV+E+ G S SAKT ILI                      Q AISCILPK W GIHYG
Sbjct: 42  AGNVVEITGASTSAKTQILI----------------------QAAISCILPKTWNGIHYG 79

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQG-------------------EEAGEN 124
           G    VLFLDLDCRFD+LR SQ+L HR+ Q    G                   E+    
Sbjct: 80  GLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKSCKSAEEKTKTV 139

Query: 125 YDKALYDMCMTRFLYVRCSDSFEFLQTLKTLHRRLEREK----EVHLLMID--------- 171
           +D+ LY  CM RFLYVRC DS E L +LKTLH R+++++    +V +LMID         
Sbjct: 140 FDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLMIDSIGAFHWTD 199

Query: 172 ------------RKKLFLQSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRY 211
                       RK L L +V E +VQ++KKLL VH ++V+ATK  I+  +Y
Sbjct: 200 RLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKY 251


>AT5G64520.1 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair
           cross complementing 2 (XRCC2) | chr5:25788069-25790204
           FORWARD LENGTH=372
          Length = 372

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 123/232 (53%), Gaps = 66/232 (28%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
           AGNV+E+ G S SAKT ILI                      Q AISCILPK W GIHYG
Sbjct: 42  AGNVVEITGASTSAKTQILI----------------------QAAISCILPKTWNGIHYG 79

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQG-------------------EEAGEN 124
           G    VLFLDLDCRFD+LR SQ+L HR+ Q    G                   E+    
Sbjct: 80  GLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKSCKSAEEKTKTV 139

Query: 125 YDKALYDMCMTRFLYVRCSDSFEFLQTLKTLHRRLEREK----EVHLLMID--------- 171
           +D+ LY  CM RFLYVRC DS E L +LKTLH R+++++    +V +LMID         
Sbjct: 140 FDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLMIDSIGAFHWTD 199

Query: 172 ------------RKKLFLQSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRY 211
                       RK L L +V E +VQ++KKLL VH ++V+ATK  I+  +Y
Sbjct: 200 RLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKY 251


>AT5G64520.3 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair
           cross complementing 2 (XRCC2) | chr5:25788069-25789884
           FORWARD LENGTH=295
          Length = 295

 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/238 (41%), Positives = 123/238 (51%), Gaps = 72/238 (30%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
           AGNV+E+ G S SAKT ILI                      Q AISCILPK W GIHYG
Sbjct: 42  AGNVVEITGASTSAKTQILI----------------------QAAISCILPKTWNGIHYG 79

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQG-------------------EEAGEN 124
           G    VLFLDLDCRFD+LR SQ+L HR+ Q    G                   E+    
Sbjct: 80  GLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKSCKSAEEKTKTV 139

Query: 125 YDKALYDMCMTRFLYVRCSDSFEFLQTLK------TLHRRLEREK----EVHLLMID--- 171
           +D+ LY  CM RFLYVRC DS E L +LK      TLH R+++++    +V +LMID   
Sbjct: 140 FDEELYASCMKRFLYVRCYDSLELLSSLKYFTVLQTLHYRIQQQEACGSQVGVLMIDSIG 199

Query: 172 ------------------RKKLFLQSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRY 211
                             RK L L +V E +VQ++KKLL VH ++V+ATK  I+  +Y
Sbjct: 200 AFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKY 257