Miyakogusa Predicted Gene

Lj3g3v3500240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3500240.2 tr|H4F2D1|H4F2D1_9RHIZ NAD-dependent
epimerase/dehydratase OS=Rhizobium sp. PDO1-076 GN=PDO_4381
PE=,33.53,5e-19,no description,NAD(P)-binding domain; NAD(P)-binding
Rossmann-fold domains,NULL; BLL6421 PROTEIN,NUL,CUFF.45875.2
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19690.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...   199   8e-52

>AT1G19690.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr1:6807925-6809562 REVERSE LENGTH=352
          Length = 352

 Score =  199 bits (507), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%), Gaps = 1/176 (0%)

Query: 25  SLSIAP-PKSEKRMFMLGMGFVGQTLARKLHNQGWVVSGTCTNHVKKKQLEDMGFHVHLF 83
           S S AP P+S  +MF+LGMGFVG   A++L    WVVSGTC +  KKK+ E  G ++H F
Sbjct: 42  SRSGAPDPESPNQMFILGMGFVGGFFAQQLKESDWVVSGTCRSDSKKKEWEKRGINLHPF 101

Query: 84  DANYPDLNVLQLLKNYTHFLVSVPPMLGIGDPMLQHEELIRSSLVNGDMQWLCYLSSTSV 143
            A+ P+ ++L  +K+YTH L+S+PP+  IGDPML++ EL+R  L +G+++WLCYLSSTSV
Sbjct: 102 SADSPEWSLLDSVKDYTHLLISIPPLADIGDPMLRNVELVRDKLSSGNLRWLCYLSSTSV 161

Query: 144 YGDCGGELVDEDYPTNPENELAKLRLASEEGWSNLAHCLGFSPLIFRLGGIYGPRR 199
           YGDCGG  V+E++  NP+ + AK+RLA+E+GW +L   LG S  I RLGGIYGP R
Sbjct: 162 YGDCGGAWVNENHLPNPKTQSAKVRLAAEQGWLSLGRDLGVSTQILRLGGIYGPGR 217