Miyakogusa Predicted Gene

Lj3g3v3430220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3430220.1 tr|D7M1Q8|D7M1Q8_ARALL Protein binding protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_910,31.3,0.000004,RNI-like,NULL; EBF1 (EIN3-BINDING F
BOX PROTEIN 1), UBIQUITIN-PROTEIN LIGASE,NULL; F-BOX/LEUCINE
RIC,NODE_22983_length_1804_cov_27.210644.path2.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07670.1 | Symbols:  | RNI-like superfamily protein | chr5:24...   238   2e-63
AT5G51380.1 | Symbols:  | RNI-like superfamily protein | chr5:20...   216   5e-57
AT5G51370.2 | Symbols:  | RNI-like superfamily protein | chr5:20...   213   6e-56
AT5G51370.1 | Symbols:  | RNI-like superfamily protein | chr5:20...   110   5e-25
AT5G23340.1 | Symbols:  | RNI-like superfamily protein | chr5:78...    55   3e-08
AT3G58530.1 | Symbols:  | RNI-like superfamily protein | chr3:21...    49   3e-06

>AT5G07670.1 | Symbols:  | RNI-like superfamily protein |
           chr5:2430421-2432065 FORWARD LENGTH=476
          Length = 476

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/189 (62%), Positives = 145/189 (76%), Gaps = 3/189 (1%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFC-PALERLHLQ 59
           MLEEL V D++M  GWL GL +CENLKTL+  SCK ID +P  +E L  C PALERL L+
Sbjct: 288 MLEELTVCDNKMESGWLGGLRYCENLKTLKLVSCKKIDNDP--DESLSCCCPALERLQLE 345

Query: 60  KCQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEG 119
           KCQLRDKN   A+F +C AARE++ QDCWGLDN + SLA+   RV+L YLEGCSLLTT G
Sbjct: 346 KCQLRDKNTVKALFKMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSG 405

Query: 120 LELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISM 179
           LE VI  W EL+ L+VVSCKNIKDS++SP+L+ LF+ L EL+WRPDT+  LSSSL    +
Sbjct: 406 LESVILHWHELEHLKVVSCKNIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGI 465

Query: 180 GKKGGKFFR 188
           G+KGGKFF+
Sbjct: 466 GEKGGKFFK 474


>AT5G51380.1 | Symbols:  | RNI-like superfamily protein |
           chr5:20875945-20877779 FORWARD LENGTH=479
          Length = 479

 Score =  216 bits (551), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 135/188 (71%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQK 60
           +LEEL + DHRM  GW+A LS+ E+LKTL   SC+ ID +PG  + LG CPALE L L++
Sbjct: 290 VLEELSICDHRMDDGWIAALSYFESLKTLLISSCRKIDSSPGPGKLLGSCPALESLQLRR 349

Query: 61  CQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEGL 120
           C L DK G  A+F VC    +V +QDCWGLD+   SLA   RRV    LEGCS+LTT GL
Sbjct: 350 CCLNDKEGMRALFKVCDGVTKVNIQDCWGLDDDSFSLAKAFRRVRFLSLEGCSILTTSGL 409

Query: 121 ELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISMG 180
           E VI  W+EL+ +RVVSCKNIKDS+IS  L++LF+ LKEL WRPDT+  LSSSLE   +G
Sbjct: 410 ESVILHWEELESMRVVSCKNIKDSEISAALSSLFSLLKELTWRPDTRSHLSSSLEGTGIG 469

Query: 181 KKGGKFFR 188
           K+G KFF+
Sbjct: 470 KRGSKFFK 477


>AT5G51370.2 | Symbols:  | RNI-like superfamily protein |
           chr5:20872783-20874192 FORWARD LENGTH=446
          Length = 446

 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 135/188 (71%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQK 60
           +LEEL + DHRM  GW+A LS+ E+LK LR  SC+ ID +PG E+ L  CPA+E L L++
Sbjct: 254 VLEELSICDHRMDDGWIAALSYFESLKILRISSCRKIDASPGPEKLLRSCPAMESLQLKR 313

Query: 61  CQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEGL 120
           C L DK G  A+F VC  A EV +QDCWGL +   SLA   RRV    LEGCS+LT+ GL
Sbjct: 314 CCLNDKEGIKALFKVCDGATEVNIQDCWGLSDDCFSLAKAFRRVRFLSLEGCSVLTSGGL 373

Query: 121 ELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISMG 180
           E VI  W+EL+ +RVVSCK+IKDS+ISP L++LF+ LKEL WRPDT+  LSSSLE   +G
Sbjct: 374 ESVILHWEELESMRVVSCKSIKDSEISPALSSLFSLLKELTWRPDTRSHLSSSLEGAGIG 433

Query: 181 KKGGKFFR 188
            +G KFF+
Sbjct: 434 IRGSKFFK 441


>AT5G51370.1 | Symbols:  | RNI-like superfamily protein |
           chr5:20872783-20873850 FORWARD LENGTH=355
          Length = 355

 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 67/98 (68%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQK 60
           +LEEL + DHRM  GW+A LS+ E+LK LR  SC+ ID +PG E+ L  CPA+E L L++
Sbjct: 254 VLEELSICDHRMDDGWIAALSYFESLKILRISSCRKIDASPGPEKLLRSCPAMESLQLKR 313

Query: 61  CQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLA 98
           C L DK G  A+F VC  A EV +QDCWGL +   SLA
Sbjct: 314 CCLNDKEGIKALFKVCDGATEVNIQDCWGLSDDCFSLA 351


>AT5G23340.1 | Symbols:  | RNI-like superfamily protein |
           chr5:7856314-7857983 FORWARD LENGTH=405
          Length = 405

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 23  CENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQKCQLRDKNGTGAVFSVCRAAREV 82
           C +L+ L  Q C  I  + G+ + +  C  ++ L + KC      G  +V   C ++ + 
Sbjct: 175 CRDLEALGLQGCTNI-TDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKT 233

Query: 83  I-LQDCWGLDN-SVLSLAIICRRVELCYLEGCSLLTTEGLELVIDSWKE-LQCLRVVSCK 139
           + L DC+ + N S+ SLA  C+ +E   + GC  ++ E + L+ DS K+ L+ LR+  C 
Sbjct: 234 LKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCL 293

Query: 140 NIKDSDISPTL 150
           NI DS +S  L
Sbjct: 294 NISDSSLSCIL 304



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 26  LKTLRFQSCKAIDGNPGMEEHLGFCPAL-ERLHLQKCQLRDKNGTGAVFSVCRAAREVIL 84
           L+ L   +CK I  + G+   +G C +L + L +  C+     G  AV   C   R + L
Sbjct: 100 LRVLNLHNCKGI-TDTGLAS-IGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHL 157

Query: 85  QDC-WGLDNSVLSLAIICRRVELCYLEGCSLLTTEGLELVIDSWKELQCLRVVSCKNIKD 143
             C +  D S+ SL+  CR +E   L+GC+ +T  GL  ++   ++++ L +  C N+ D
Sbjct: 158 AGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGD 217

Query: 144 SDISPTLATLFATLKELR 161
           + +S       ++LK L+
Sbjct: 218 AGVSSVAKACASSLKTLK 235


>AT3G58530.1 | Symbols:  | RNI-like superfamily protein |
           chr3:21645759-21648219 FORWARD LENGTH=353
          Length = 353

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 18  AGLSFCENLKTLRFQSCKAID---GNPGMEEHLGF----CP----ALERLHLQKCQLRDK 66
           AG      L   R++  K I+       ++ HL      CP    +LE L+L  CQ    
Sbjct: 67  AGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISD 126

Query: 67  NGTGAVFSVCRAAREVILQDCWGL---DNSVLSLAIICRRVELCYLEGCSLLTTEGLELV 123
           NG  A+ S+C   +  +    W +   D  + +L   CR +    L GC  LT + ++LV
Sbjct: 127 NGIEAITSICPKLK--VFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLV 184

Query: 124 IDSWKELQCLRVVSCKNIKDSDISPTLATLFA 155
            +S+ +L+ L +  C  I D  +   L   F+
Sbjct: 185 AESYPDLESLNITRCVKITDDGLLQVLQKCFS 216