Miyakogusa Predicted Gene

Lj3g3v3430110.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3430110.3 tr|G0HHN1|G0HHN1_CORVD 8-amino-7-oxononanoate
synthase OS=Corynebacterium variabile (strain DSM
4470,39.13,1e-18,PLP-dependent transferases,Pyridoxal
phosphate-dependent transferase, major domain;
Aminotran_1_2,Am,CUFF.45809.3
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-13...   303   5e-83
AT5G04620.1 | Symbols: ATBIOF, BIOF | biotin F | chr5:1328004-13...   179   2e-45

>AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F |
           chr5:1327292-1329934 FORWARD LENGTH=476
          Length = 476

 Score =  303 bits (777), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/243 (60%), Positives = 182/243 (74%), Gaps = 4/243 (1%)

Query: 9   WEMWVEEALGTLNSLKVLRSLRPICLRKDEPPSHCLESAVGEGALQVFDEMQQWDRSSVE 68
           W+  VEEA+  L S ++LRSLRPIC+ +          A G    +VFD + QWDR+SVE
Sbjct: 6   WDKTVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDGYEVFDGLCQWDRTSVE 65

Query: 69  VEMSEATFSRWMNDTPSSGDDIIHSAVAGDDEPRAFCDKFKKLILFSGNDYLGLSSHPTI 128
           V +S  TF +W++D PS+G++I     +GD        +FKKL+LFSGNDYLGLSSHPTI
Sbjct: 66  VSVSIPTFQKWLHDEPSNGEEIF----SGDALAECRKGRFKKLLLFSGNDYLGLSSHPTI 121

Query: 129 GRAAAKAAQEHGMGPRGSALICGYTNYHRLLESSLADLKNKEDCLLCPTGFAANMAFMTA 188
             AAA A +E+GMGP+GSALICGYT YHRLLESSLA LK KEDCL+CPTGFAANMA M A
Sbjct: 122 SNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMVA 181

Query: 189 LGSIASLLAGNKLPSDDEMIAVFSDALNHASIIDGLRLAERQKGVKVYIYKHCDMSHLNV 248
           +GS+ASLLA +  P  +E +A+FSDALNHASIIDG+RLAERQ  V+V++Y+HCDM HLN 
Sbjct: 182 IGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNS 241

Query: 249 LLS 251
           LLS
Sbjct: 242 LLS 244


>AT5G04620.1 | Symbols: ATBIOF, BIOF | biotin F |
           chr5:1328004-1329934 FORWARD LENGTH=343
          Length = 343

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/111 (74%), Positives = 96/111 (86%)

Query: 141 MGPRGSALICGYTNYHRLLESSLADLKNKEDCLLCPTGFAANMAFMTALGSIASLLAGNK 200
           MGP+GSALICGYT YHRLLESSLA LK KEDCL+CPTGFAANMA M A+GS+ASLLA + 
Sbjct: 1   MGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASG 60

Query: 201 LPSDDEMIAVFSDALNHASIIDGLRLAERQKGVKVYIYKHCDMSHLNVLLS 251
            P  +E +A+FSDALNHASIIDG+RLAERQ  V+V++Y+HCDM HLN LLS
Sbjct: 61  KPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLS 111