Miyakogusa Predicted Gene

Lj3g3v3386740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3386740.1 tr|C1MIJ3|C1MIJ3_MICPC Predicted protein
(Fragment) OS=Micromonas pusilla (strain CCMP1545)
GN=MICPU,52.13,2e-19,SUBFAMILY NOT NAMED,NULL; NADH-UBIQUINONE
OXIDOREDUCTASE B22 SUBUNIT,NULL; Complex1_LYR,Complex 1
LY,CUFF.45788.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34700.1 | Symbols: CIB22, AtCIB22 | LYR family of Fe/S clust...   189   3e-49

>AT4G34700.1 | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster
           biogenesis protein | chr4:16556874-16558362 FORWARD
           LENGTH=117
          Length = 117

 Score =  189 bits (481), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 99/113 (87%)

Query: 1   MSVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDT 60
           +S  AYFARRAAQKERVRILYRRALKDTLNWAVHRH+FY DA++LR++F  N+ VED+D 
Sbjct: 4   VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVEDVDR 63

Query: 61  IDRLIDDAEAHYNKFRHPDPYIVPWAPGGSKFCRNPAPPPGIEIVYNYGREDN 113
           ID+LI   EA YNK+RHPDPYIVPWAPGGSKFCRNP PP GIEIVYNYG EDN
Sbjct: 64  IDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116