Miyakogusa Predicted Gene

Lj3g3v3375900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3375900.1 Non Chatacterized Hit- tr|B9RGE1|B9RGE1_RICCO
Putative uncharacterized protein OS=Ricinus communis G,43.21,3e-19,
,GO024595.path2.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    56   1e-08

>AT2G38780.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; Has 58 Blast hits to 58 proteins in 23
           species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi -
           0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
           (source: NCBI BLink). | chr2:16210864-16214110 FORWARD
           LENGTH=465
          Length = 465

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 65/124 (52%), Gaps = 29/124 (23%)

Query: 65  VDPVKLAFNKAKTYKEESGKSNPGSGIEQSDANGENSVNQGDAVDGRQKDLPVSLKIAME 124
           VDPVKLA  KA+ YK+        S  EQ         N GD      ++LP+S+K AM+
Sbjct: 84  VDPVKLALKKAEAYKK--------SKSEQKKPEK----NAGD------EELPLSVKAAMQ 125

Query: 125 KAKKYKQNKGV---AIAE-----TTQGLQGGRERTLE-NSVGEKEGKLSVSKIDFVGLDF 175
           KA  YK+ KG+   A+A+     T Q       + +E N V +KE  L VS IDF+GL F
Sbjct: 126 KANDYKKRKGLGTDAVAKAKPSNTDQSFVRLANKVVEDNDVKKKE--LKVSSIDFMGLGF 183

Query: 176 GDKK 179
            DKK
Sbjct: 184 ADKK 187