Miyakogusa Predicted Gene

Lj3g3v3374680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3374680.1 Non Chatacterized Hit- tr|D8U3B6|D8U3B6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,54,3e-19,SUBFAMILY NOT NAMED,NULL; MICROFIBRIL-ASSOCIATED
PROTEIN,Micro-fibrillar-associated protein 1, C-ter,CUFF.45726.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17900.1 | Symbols:  | microfibrillar-associated protein-rela...   116   3e-27
AT4G08580.1 | Symbols:  | microfibrillar-associated protein-rela...   116   4e-27

>AT5G17900.1 | Symbols:  | microfibrillar-associated protein-related
           | chr5:5925144-5926690 FORWARD LENGTH=435
          Length = 435

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 18/111 (16%)

Query: 1   MSEEDRIREWQIRNKK------KKKWRFMQRYYHCGAFFQDQ---------LDTIMLRDF 45
           M+E++R R+W+ +N K      KKKW FMQ+YYH GAFFQ            D I  RDF
Sbjct: 296 MTEQER-RDWERKNPKPLSAQPKKKWNFMQKYYHKGAFFQADPDDEAGSAGTDGIFQRDF 354

Query: 46  SAPTGQDKMDKTILPSVMQVKRFGLRGRSKWTHLINEDTTHHRTNPSWTCN 96
           SAPTG+D++DK+ILP VMQVK FG  GR+KWTHL+NEDTT   +NP WT N
Sbjct: 355 SAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW-SNP-WTSN 403


>AT4G08580.1 | Symbols:  | microfibrillar-associated protein-related
           | chr4:5462190-5463718 FORWARD LENGTH=435
          Length = 435

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 18/111 (16%)

Query: 1   MSEEDRIREWQIRNKK------KKKWRFMQRYYHCGAFFQDQ---------LDTIMLRDF 45
           M+E++R R+W+ +N K      KKKW FMQ+YYH GAFFQ            D I  RDF
Sbjct: 296 MTEQER-RDWERKNPKPSSAQPKKKWNFMQKYYHKGAFFQADPDDEAGSAGTDGIFQRDF 354

Query: 46  SAPTGQDKMDKTILPSVMQVKRFGLRGRSKWTHLINEDTTHHRTNPSWTCN 96
           SAPTG+D++DK+ILP VMQVK FG  GR+KWTHL+NEDTT   +NP WT N
Sbjct: 355 SAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDW-SNP-WTSN 403