Miyakogusa Predicted Gene

Lj3g3v3374660.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3374660.2 tr|D8QZF9|D8QZF9_SELML Ubiquitin-protein ligase,
PUB43 OS=Selaginella moellendorffii GN=PUB43-2 PE=4,29.52,3e-18,ARM
repeat,Armadillo-type fold; no description,Armadillo-like helical;
seg,NULL; PUTATIVE ARM REPEAT,CUFF.45730.2
         (386 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76390.2 | Symbols:  | ARM repeat superfamily protein | chr1:...    83   3e-16
AT1G76390.1 | Symbols:  | ARM repeat superfamily protein | chr1:...    83   3e-16
AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associ...    75   6e-14
AT1G68940.1 | Symbols:  | Armadillo/beta-catenin-like repeat fam...    74   2e-13
AT1G68940.2 | Symbols:  | Armadillo/beta-catenin-like repeat fam...    74   2e-13
AT1G68940.3 | Symbols:  | Armadillo/beta-catenin-like repeat fam...    74   2e-13

>AT1G76390.2 | Symbols:  | ARM repeat superfamily protein |
           chr1:28655914-28658531 FORWARD LENGTH=811
          Length = 811

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 186/400 (46%), Gaps = 46/400 (11%)

Query: 30  LVKTGIVGYLLQLLFSV--TSVLMTLREPASAMLARI------------AQSESFLVNQD 75
           L+ TGI+  L++ LF V    + + L+E ++ +LA I                  LV+++
Sbjct: 350 LINTGILPPLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEE 409

Query: 76  AAQQMLTLLSLNNSKVIQGHLLEALDSIASHPGA-----SKVRRKMKEKGALQLILPLLK 130
             + +L L S N    IQG LL  L  + S P +     S +R        +Q +  + +
Sbjct: 410 IVENLLQLTS-NTGPEIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFV-EIHE 467

Query: 131 ETKIRSKALSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTSD--NEKANAVGILS 186
              +R  ++ LL+ +S  ++EE +  L  T   L ++V+I+   T     E+A A G+L+
Sbjct: 468 NDDLRLASIKLLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLA 527

Query: 187 NLPVNDKKVTDMLKRAN----LLPMLVHIMDSSTGSNSLTRSIIAESIAGIVIRFTCASD 242
            LP  D  +T  L R      ++  +V I           R+ + E +  I+ R T A  
Sbjct: 528 ELPERDLVLTMRLLREGAFEKIISKIVGIRQGEIRGIRFERTFL-EGLVSILARITFALT 586

Query: 243 KKLQ--LLSAEQGVIPLLVKVLSGGSTITKFRA-ATSLAQLSQNS--------LPLRRSW 291
           K+    L   E+ +  L + +L   S     RA AT+L  LS  S        LP     
Sbjct: 587 KETDATLFCCEKNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYC 646

Query: 292 KSRWLCASHS-VNNAYCEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKDEEAVEASLSAL 350
            S + C S   V    C++H G C V  +FCL++  AV  L+ +L  ++++ V  +L+AL
Sbjct: 647 VSIFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAAL 706

Query: 351 STLLQDEI-WEGGVKCIAELSGVDPIVKIL---ETGNLKV 386
           STLL+D +    GV+ I E  G+ PI+ +L    T NL++
Sbjct: 707 STLLEDGLDVVQGVRLIDEADGITPILNVLLENRTENLRI 746


>AT1G76390.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:28655914-28658531 FORWARD LENGTH=811
          Length = 811

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 186/400 (46%), Gaps = 46/400 (11%)

Query: 30  LVKTGIVGYLLQLLFSV--TSVLMTLREPASAMLARI------------AQSESFLVNQD 75
           L+ TGI+  L++ LF V    + + L+E ++ +LA I                  LV+++
Sbjct: 350 LINTGILPPLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEE 409

Query: 76  AAQQMLTLLSLNNSKVIQGHLLEALDSIASHPGA-----SKVRRKMKEKGALQLILPLLK 130
             + +L L S N    IQG LL  L  + S P +     S +R        +Q +  + +
Sbjct: 410 IVENLLQLTS-NTGPEIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFV-EIHE 467

Query: 131 ETKIRSKALSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTSD--NEKANAVGILS 186
              +R  ++ LL+ +S  ++EE +  L  T   L ++V+I+   T     E+A A G+L+
Sbjct: 468 NDDLRLASIKLLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLA 527

Query: 187 NLPVNDKKVTDMLKRAN----LLPMLVHIMDSSTGSNSLTRSIIAESIAGIVIRFTCASD 242
            LP  D  +T  L R      ++  +V I           R+ + E +  I+ R T A  
Sbjct: 528 ELPERDLVLTMRLLREGAFEKIISKIVGIRQGEIRGIRFERTFL-EGLVSILARITFALT 586

Query: 243 KKLQ--LLSAEQGVIPLLVKVLSGGSTITKFRA-ATSLAQLSQNS--------LPLRRSW 291
           K+    L   E+ +  L + +L   S     RA AT+L  LS  S        LP     
Sbjct: 587 KETDATLFCCEKNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYC 646

Query: 292 KSRWLCASHS-VNNAYCEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKDEEAVEASLSAL 350
            S + C S   V    C++H G C V  +FCL++  AV  L+ +L  ++++ V  +L+AL
Sbjct: 647 VSIFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAAL 706

Query: 351 STLLQDEI-WEGGVKCIAELSGVDPIVKIL---ETGNLKV 386
           STLL+D +    GV+ I E  G+ PI+ +L    T NL++
Sbjct: 707 STLLEDGLDVVQGVRLIDEADGITPILNVLLENRTENLRI 746


>AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 |
           senescence-associated E3 ubiquitin ligase 1 |
           chr1:7217812-7220609 FORWARD LENGTH=801
          Length = 801

 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 189/380 (49%), Gaps = 31/380 (8%)

Query: 30  LVKTGIVGYLLQLLFSV--TSVLMTLREPASAMLARIAQ-----SESFLVNQDAAQQMLT 82
           L+  GI+  L++ LF V   ++ + L+E ++ +LA I        ++ LV+++  + +L 
Sbjct: 348 LISKGILPPLIKDLFYVGPNNLPIRLKEVSATILANIVNIGYDFDKATLVSENRVENLLH 407

Query: 83  LLSLNNSKVIQGHLLEALDSIASHPGA-SKVRRKMKEKGA---LQLILPLLKETKIRSKA 138
           L+S N    IQ  LLE L  + S P    KV   +K  GA   L   + + +   +R  +
Sbjct: 408 LIS-NTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLAS 466

Query: 139 LSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTS-DNEKANAVGILSNLPVNDKKV 195
           + LL+ LS  ++EE ++ L  T   L ++V I+   T    E+A A G+L+ LP  D  +
Sbjct: 467 IKLLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGL 526

Query: 196 T-DMLKRANLLPMLVHIMDSSTGSNSLTRSI--IAESIAGIVIRFTCASDKKLQLLS--A 250
           T +ML+      ++  +     G     R +    E +  I+ R T   +K+ + ++   
Sbjct: 527 TQEMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCR 586

Query: 251 EQGVIPLLVKVL-SGGSTITKFRAATSLAQLSQNSLPLRR--------SWKSRWLCASHS 301
           E  V  L + +L S G    +  +A +L  LS  S+ L R           S + C    
Sbjct: 587 EHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKP 646

Query: 302 -VNNAYCEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKDEEAVEASLSALSTLLQDEI-W 359
            V N  C++H G C +  TFCL++ GAV  L+ +L  ++ + VEA+L+ALS+LL+D +  
Sbjct: 647 HVVNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDV 706

Query: 360 EGGVKCIAELSGVDPIVKIL 379
           E GVK + E  G+  I+ +L
Sbjct: 707 EKGVKILDEADGIRHILNVL 726


>AT1G68940.1 | Symbols:  | Armadillo/beta-catenin-like repeat family
           protein | chr1:25922001-25925374 REVERSE LENGTH=1033
          Length = 1033

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 182/398 (45%), Gaps = 54/398 (13%)

Query: 26  NVQRLVKTGIVGYLLQLLFS--VTSVLMTLREPASAMLARIAQS----ESFLVNQDA--- 76
           N + LV+ GI+  +++ +F+  V S LM  R  A+ +LA I +S    E+F VN      
Sbjct: 566 NNKILVEVGIIKIMVEEMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTL 625

Query: 77  -----AQQMLTLLSLNNSKVIQGHLLEALDSIASHPGA-SKVRRKMKEKGALQLILPLLK 130
                   ++ +L  ++   +   L+  L S++  P A + +   +KE  A   ++ L+ 
Sbjct: 626 GSDYFVYNIIHMLKNSSPDDLNIDLIRILLSLSKSPRAMATIVSVIKETDASFAMIELIN 685

Query: 131 --ETKIRSKALSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTSDNEK-ANAVGIL 185
               ++   AL LL  L+  +    SE L +T     N++   +      EK A +  +L
Sbjct: 686 NPHDELGVGALKLLIALTPYIGHTLSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLL 745

Query: 186 SNLP----------VNDKKVTDMLKRANLLPMLVHIMDSSTGSNSLTRSIIAESIAGIVI 235
           + LP          VN+  V+++L         +H++  S    S   +   E + GI++
Sbjct: 746 AKLPHQNLTLNLALVNESIVSEILH-------AIHLIQRSGARTSRYATDFLEGLVGILV 798

Query: 236 RFTCA-SDKKLQLLSAEQGVIPLLVKVLSGGSTITKFR-AATSLAQLSQNSLPLRRSWKS 293
           RFT    + ++  L+    +  + V +L   S+    R +AT L  LS  ++ L R  + 
Sbjct: 799 RFTTTLYEPQMMYLARNHDLTSVFVDLLMKTSSDEVQRLSATGLENLSSTTMTLSRPPQP 858

Query: 294 R--WLCASHSVNNAY------------CEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKD 339
           R      S S+  ++            C +H G C   +TFCL++A A++ L+  L    
Sbjct: 859 RSTKFMGSLSMPRSFSLRSSKKKQIEICAIHRGVCSAKNTFCLVEANAITKLLACLQSDK 918

Query: 340 EEAVEASLSALSTLLQDEIW-EGGVKCIAELSGVDPIV 376
            E VE++L+A+ TLL D++  E  +  ++E++ V  I+
Sbjct: 919 VEVVESALAAICTLLDDKVEVEKSLSMLSEMNAVQLIL 956


>AT1G68940.2 | Symbols:  | Armadillo/beta-catenin-like repeat family
           protein | chr1:25921453-25925374 REVERSE LENGTH=1035
          Length = 1035

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 182/398 (45%), Gaps = 54/398 (13%)

Query: 26  NVQRLVKTGIVGYLLQLLFS--VTSVLMTLREPASAMLARIAQS----ESFLVNQDA--- 76
           N + LV+ GI+  +++ +F+  V S LM  R  A+ +LA I +S    E+F VN      
Sbjct: 566 NNKILVEVGIIKIMVEEMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTL 625

Query: 77  -----AQQMLTLLSLNNSKVIQGHLLEALDSIASHPGA-SKVRRKMKEKGALQLILPLLK 130
                   ++ +L  ++   +   L+  L S++  P A + +   +KE  A   ++ L+ 
Sbjct: 626 GSDYFVYNIIHMLKNSSPDDLNIDLIRILLSLSKSPRAMATIVSVIKETDASFAMIELIN 685

Query: 131 --ETKIRSKALSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTSDNEK-ANAVGIL 185
               ++   AL LL  L+  +    SE L +T     N++   +      EK A +  +L
Sbjct: 686 NPHDELGVGALKLLIALTPYIGHTLSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLL 745

Query: 186 SNLP----------VNDKKVTDMLKRANLLPMLVHIMDSSTGSNSLTRSIIAESIAGIVI 235
           + LP          VN+  V+++L         +H++  S    S   +   E + GI++
Sbjct: 746 AKLPHQNLTLNLALVNESIVSEILH-------AIHLIQRSGARTSRYATDFLEGLVGILV 798

Query: 236 RFTCA-SDKKLQLLSAEQGVIPLLVKVLSGGSTITKFR-AATSLAQLSQNSLPLRRSWKS 293
           RFT    + ++  L+    +  + V +L   S+    R +AT L  LS  ++ L R  + 
Sbjct: 799 RFTTTLYEPQMMYLARNHDLTSVFVDLLMKTSSDEVQRLSATGLENLSSTTMTLSRPPQP 858

Query: 294 R--WLCASHSVNNAY------------CEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKD 339
           R      S S+  ++            C +H G C   +TFCL++A A++ L+  L    
Sbjct: 859 RSTKFMGSLSMPRSFSLRSSKKKQIEICAIHRGVCSAKNTFCLVEANAITKLLACLQSDK 918

Query: 340 EEAVEASLSALSTLLQDEIW-EGGVKCIAELSGVDPIV 376
            E VE++L+A+ TLL D++  E  +  ++E++ V  I+
Sbjct: 919 VEVVESALAAICTLLDDKVEVEKSLSMLSEMNAVQLIL 956


>AT1G68940.3 | Symbols:  | Armadillo/beta-catenin-like repeat family
           protein | chr1:25921453-25925374 REVERSE LENGTH=1061
          Length = 1061

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 182/398 (45%), Gaps = 54/398 (13%)

Query: 26  NVQRLVKTGIVGYLLQLLFS--VTSVLMTLREPASAMLARIAQS----ESFLVNQDA--- 76
           N + LV+ GI+  +++ +F+  V S LM  R  A+ +LA I +S    E+F VN      
Sbjct: 566 NNKILVEVGIIKIMVEEMFTKRVFSDLMNSRNEAATILANILESGLEHETFEVNTHGHTL 625

Query: 77  -----AQQMLTLLSLNNSKVIQGHLLEALDSIASHPGA-SKVRRKMKEKGALQLILPLLK 130
                   ++ +L  ++   +   L+  L S++  P A + +   +KE  A   ++ L+ 
Sbjct: 626 GSDYFVYNIIHMLKNSSPDDLNIDLIRILLSLSKSPRAMATIVSVIKETDASFAMIELIN 685

Query: 131 --ETKIRSKALSLLYTLSKDLTEEFSEHLDQT--HLLNIVNIVISTTSDNEK-ANAVGIL 185
               ++   AL LL  L+  +    SE L +T     N++   +      EK A +  +L
Sbjct: 686 NPHDELGVGALKLLIALTPYIGHTLSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLL 745

Query: 186 SNLP----------VNDKKVTDMLKRANLLPMLVHIMDSSTGSNSLTRSIIAESIAGIVI 235
           + LP          VN+  V+++L         +H++  S    S   +   E + GI++
Sbjct: 746 AKLPHQNLTLNLALVNESIVSEILH-------AIHLIQRSGARTSRYATDFLEGLVGILV 798

Query: 236 RFTCA-SDKKLQLLSAEQGVIPLLVKVLSGGSTITKFR-AATSLAQLSQNSLPLRRSWKS 293
           RFT    + ++  L+    +  + V +L   S+    R +AT L  LS  ++ L R  + 
Sbjct: 799 RFTTTLYEPQMMYLARNHDLTSVFVDLLMKTSSDEVQRLSATGLENLSSTTMTLSRPPQP 858

Query: 294 R--WLCASHSVNNAY------------CEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKD 339
           R      S S+  ++            C +H G C   +TFCL++A A++ L+  L    
Sbjct: 859 RSTKFMGSLSMPRSFSLRSSKKKQIEICAIHRGVCSAKNTFCLVEANAITKLLACLQSDK 918

Query: 340 EEAVEASLSALSTLLQDEIW-EGGVKCIAELSGVDPIV 376
            E VE++L+A+ TLL D++  E  +  ++E++ V  I+
Sbjct: 919 VEVVESALAAICTLLDDKVEVEKSLSMLSEMNAVQLIL 956