Miyakogusa Predicted Gene

Lj3g3v3360960.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3360960.1 Non Chatacterized Hit- tr|D7LBF2|D7LBF2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,88,3e-19,seg,NULL; PROTEIN RER1,Retrieval of early ER protein
Rer1; Rer1,Retrieval of early ER protein
Rer1,NODE_16275_length_817_cov_327.631592.path2.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:1826...    91   2e-19
AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum ...    89   6e-19
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...    75   7e-15
AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...    75   8e-15
AT2G18240.1 | Symbols:  | Rer1 family protein | chr2:7935466-793...    72   7e-14
AT2G18240.2 | Symbols:  | Rer1 family protein | chr2:7935466-793...    72   8e-14

>AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein |
           chr4:18264280-18265531 FORWARD LENGTH=191
          Length = 191

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/44 (95%), Positives = 43/44 (97%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIP +
Sbjct: 131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174


>AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
           retrieval protein 1B | chr2:9243550-9244579 FORWARD
           LENGTH=195
          Length = 195

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/45 (88%), Positives = 44/45 (97%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK+KYIP ++
Sbjct: 130 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174


>AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=212
          Length = 212

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+P +
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195


>AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=211
          Length = 211

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+P +
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195


>AT2G18240.1 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=221
          Length = 221

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y P ++
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDV 178


>AT2G18240.2 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=220
          Length = 220

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y P ++
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDV 178