Miyakogusa Predicted Gene

Lj3g3v3338280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338280.1 Non Chatacterized Hit- tr|I3S4J9|I3S4J9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.21,0,LYTB,LytB
protein; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; ispH_lytB:
4-hydroxy-3-methylbut,CUFF.45648.1
         (447 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34350.1 | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-2...   728   0.0  

>AT4G34350.1 | Symbols: CLB6, ISPH, HDR |
           4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
           chr4:16428681-16431038 REVERSE LENGTH=466
          Length = 466

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/430 (80%), Positives = 385/430 (89%), Gaps = 12/430 (2%)

Query: 29  RKLFSVVRCSSAD-----------PDFDAKVFRKNLTRSANYNRKGFGHKEETLKLMNRE 77
           RK  SV RCSS D            DFDAKVFRKNLTRS NYNRKGFGHKEETLKLMNRE
Sbjct: 32  RKALSV-RCSSGDENAPSPSVVMDSDFDAKVFRKNLTRSDNYNRKGFGHKEETLKLMNRE 90

Query: 78  YTSDIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEI 137
           YTSDI++TLK NGY Y+WG+VTV LA+AYGFCWGVERAVQIAYEARKQFP+E++W+TNEI
Sbjct: 91  YTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWITNEI 150

Query: 138 IHNPTVNKRLEDMQVQNIPLEDGKKQFDVVNKGDVVMFPAFGAGVDEMLTLSEKNVQIVD 197
           IHNPTVNKRLEDM V+ IP+ED KKQFDVV K DVV+ PAFGAGVDEM  L++K VQIVD
Sbjct: 151 IHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKVQIVD 210

Query: 198 TTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATASFAAKYIIVKNMAEAEYVCDYI 257
           TTCPWV+KVWNTVEKHKKG+YTS+IHGKY HEETIATASFA KYIIVKNM EA YVCDYI
Sbjct: 211 TTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYVCDYI 270

Query: 258 LGGELNGSSSTKEALLEKFKFAVSKGFDPDTDLVKLGIANQTTMLKGETEDIGKLVERTM 317
           LGG+ +GSSSTKE  +EKFK+A+SKGFDPD DLVK+GIANQTTMLKGETE+IG+L+E TM
Sbjct: 271 LGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLLETTM 330

Query: 318 MRKFGVENVNEHFISFNTICDATQERQDAMYKLVERDMDLMLVVGGWNSSNTSHLQEIAE 377
           MRK+GVENV+ HFISFNTICDATQERQDA+Y+LVE  +DLMLVVGGWNSSNTSHLQEI+E
Sbjct: 331 MRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQEISE 390

Query: 378 ERRIPSYWIDTEQRIGPGNRIAYKLMHGELVEKENFLPQGPITIGITSGASTPDKVVEDV 437
            R IPSYWID+E+RIGPGN+IAYKL +GELVEKENFLP+GPITIG+TSGASTPDKVVED 
Sbjct: 391 ARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKVVEDA 450

Query: 438 LIKVFDLKRE 447
           L+KVFD+KRE
Sbjct: 451 LVKVFDIKRE 460