Miyakogusa Predicted Gene

Lj3g3v3338150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338150.1 tr|G7KP90|G7KP90_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_6g065510 PE=4
SV=1,38.51,2e-19,FBA_1,F-box associated domain, type 1,86149_g.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    54   4e-08
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    54   4e-08
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    47   4e-06

>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 14  LIFSFDLGKENNAQLSLPYSARRRYEIPDFRPNLGVLEGCLCFCHTNKKSHFAIWQMKEF 73
           LI  FDL  E    +  P +        D + ++GVL+GCLC      +S+  +W MKE+
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEY 291

Query: 74  GVHNSWTQLFKITTGYESIIDSILSWPCFAMYLSEKGYILLSKRGLFQCRAVLYTQKDNK 133
            V +SWT++F +    +S+     S+    +Y  +K  +LL    L   + V +  +  K
Sbjct: 292 NVRDSWTKVFTVQKP-KSV--KSFSYMRPLVYSKDKKKVLLE---LNNTKLVWFDLESKK 345

Query: 134 LQGTNIACCANNYIESLV 151
           +    I  C ++Y   LV
Sbjct: 346 MSTLRIKDCPSSYSAELV 363


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 14  LIFSFDLGKENNAQLSLPYSARRRYEIPDFRPNLGVLEGCLCFCHTNKKSHFAIWQMKEF 73
           LI  FDL  E    +  P +        D + ++GVL+GCLC      +S+  +W MKE+
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNV--DIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEY 291

Query: 74  GVHNSWTQLFKITTGYESIIDSILSWPCFAMYLSEKGYILLSKRGLFQCRAVLYTQKDNK 133
            V +SWT++F +    +S+     S+    +Y  +K  +LL    L   + V +  +  K
Sbjct: 292 NVRDSWTKVFTVQKP-KSV--KSFSYMRPLVYSKDKKKVLLE---LNNTKLVWFDLESKK 345

Query: 134 LQGTNIACCANNYIESLV 151
           +    I  C ++Y   LV
Sbjct: 346 MSTLRIKDCPSSYSAELV 363


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 15  IFSFDLGKENNAQLSLPYSARRRYEIPDFRPNLGVLEGCLCFCHTNKKSHFAIWQMKEFG 74
           I  +DL  ++   LS P    +   I D   ++GVL+GC+C    ++ SH  +W +KE+ 
Sbjct: 234 IIKYDLASDDIGVLSFP----QELYIED-NMDIGVLDGCVCLMCYDEYSHVDVWVLKEYE 288

Query: 75  VHNSWTQLFKI 85
            + SWT+L+++
Sbjct: 289 DYKSWTKLYRV 299