Miyakogusa Predicted Gene
- Lj3g3v3337430.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3337430.2 tr|A9TTB7|A9TTB7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_171835,50,6e-18,seg,NULL,CUFF.45612.2
(183 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19480.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 116 8e-27
AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 116 8e-27
AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thalian... 108 2e-24
>AT5G19480.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12230.1); Has 15754 Blast hits to 7644
proteins in 441 species: Archae - 6; Bacteria - 451;
Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses -
38; Other Eukaryotes - 4987 (source: NCBI BLink). |
chr5:6571828-6572929 FORWARD LENGTH=207
Length = 207
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Query: 1 MDRKGKGFGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRK 60
M+ + FG G RELGGA DLI+QY+L P++E FCK+SLP S+S+ YL N+VGDT IRK
Sbjct: 1 MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59
Query: 61 GEGMELSQLCQNTYVS--EKKARLHPFELDVLSEAFHMKKGLPSSVPKSE 108
GEGM+L QL N +S + AR+ PF LD L EAF + P +P +E
Sbjct: 60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAE 109
>AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:6571828-6572929
FORWARD LENGTH=207
Length = 207
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Query: 1 MDRKGKGFGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRK 60
M+ + FG G RELGGA DLI+QY+L P++E FCK+SLP S+S+ YL N+VGDT IRK
Sbjct: 1 MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59
Query: 61 GEGMELSQLCQNTYVS--EKKARLHPFELDVLSEAFHMKKGLPSSVPKSE 108
GEGM+L QL N +S + AR+ PF LD L EAF + P +P +E
Sbjct: 60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAE 109
>AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19480.2);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink). | chr5:3953915-3955285 REVERSE
LENGTH=221
Length = 221
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
Query: 8 FGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRKGEGMELS 67
FG G REL GA DLISQ++L ++E FCKKSLP+S+S++ YL NVVGDT IRKGEGM+L
Sbjct: 8 FG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLD 66
Query: 68 QLCQNTYVS-EKKARLHPFELDVLSEAFHMKKGLPSSVPKSE 108
QL ++ S E R+ PF++D L E+F + P +P +E
Sbjct: 67 QLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAE 108