Miyakogusa Predicted Gene

Lj3g3v3336250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3336250.1 CUFF.45593.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06160.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    55   6e-08
AT3G06160.2 | Symbols:  | AP2/B3-like transcriptional factor fam...    55   7e-08
AT5G66980.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    55   8e-08
AT3G06220.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    54   2e-07
AT4G34400.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    53   3e-07
AT3G53310.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    53   3e-07
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    52   5e-07
AT2G35310.1 | Symbols:  | Transcriptional factor B3 family prote...    51   1e-06
AT5G18090.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    50   3e-06
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...    48   8e-06

>AT3G06160.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:1864326-1867192 FORWARD LENGTH=330
          Length = 330

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 161 PDFFKVFLPERHSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKAIPIDNQLYFD 220
           P FF VFL    SE M++P ++  L  +    P+  IL  + G+ W+V       Q+YF+
Sbjct: 23  PRFFTVFLSHCSSESMVIPRSYYNLLPRP--LPKTAILIGTGGRFWKVAMTSKQEQVYFE 80

Query: 221 VGWKQFREDNCLKAANFVFLTHIESNEFKFKICESTGCERTKV 263
            GW  F  DN LK   F+         ++  I     C+ T+ 
Sbjct: 81  QGWGNFVADNQLKEGEFLTFVFDGHKSYEVSIYGRGDCKETRA 123



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 13  LVFCWHNLQKVPPEFLKYLEEDFSANVILIGSSGYQWQVTIF-KGEKVYMQNGWPQVLTD 71
           L  C      +P  +   L        ILIG+ G  W+V +  K E+VY + GW   + D
Sbjct: 30  LSHCSSESMVIPRSYYNLLPRPLPKTAILIGTGGRFWKVAMTSKQEQVYFEQGWGNFVAD 89

Query: 72  NSVKSKELLLFTYNGQNRFLVQFFSSNGCERQCTKTIKHEEAA 114
           N +K  E L F ++G   + V  +    C ++    I+ EE +
Sbjct: 90  NQLKEGEFLTFVFDGHKSYEVSIYGRGDC-KETRAVIQVEEIS 131


>AT3G06160.2 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:1864326-1867192 FORWARD LENGTH=374
          Length = 374

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 161 PDFFKVFLPERHSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKAIPIDNQLYFD 220
           P FF VFL    SE M++P ++  L  +    P+  IL  + G+ W+V       Q+YF+
Sbjct: 67  PRFFTVFLSHCSSESMVIPRSYYNLLPRP--LPKTAILIGTGGRFWKVAMTSKQEQVYFE 124

Query: 221 VGWKQFREDNCLKAANFVFLTHIESNEFKFKICESTGCERTKV 263
            GW  F  DN LK   F+         ++  I     C+ T+ 
Sbjct: 125 QGWGNFVADNQLKEGEFLTFVFDGHKSYEVSIYGRGDCKETRA 167



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 13  LVFCWHNLQKVPPEFLKYLEEDFSANVILIGSSGYQWQVTIF-KGEKVYMQNGWPQVLTD 71
           L  C      +P  +   L        ILIG+ G  W+V +  K E+VY + GW   + D
Sbjct: 74  LSHCSSESMVIPRSYYNLLPRPLPKTAILIGTGGRFWKVAMTSKQEQVYFEQGWGNFVAD 133

Query: 72  NSVKSKELLLFTYNGQNRFLVQFFSSNGCERQCTKTIKHEEAA 114
           N +K  E L F ++G   + V  +    C ++    I+ EE +
Sbjct: 134 NQLKEGEFLTFVFDGHKSYEVSIYGRGDC-KETRAVIQVEEIS 175


>AT5G66980.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:26741563-26742826 FORWARD LENGTH=334
          Length = 334

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 163 FFKVFLPERHSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKAIPIDNQ----LY 218
           FFKVFLPE  S  +++P AF+ +  +    P++  L +  G++W V+    D +    ++
Sbjct: 10  FFKVFLPEFGSHELVIPPAFIDMLEKPL--PKEAFLVDEIGRLWCVETKTEDTEERFCVF 67

Query: 219 FDVGWKQFREDNCLKAANFVFLTHIESNEFKFKICESTGCER 260
           F  GW+ F  D  L+  +F+  ++   + F   I  + GC++
Sbjct: 68  FTKGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIFANDGCKK 109



 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 23  VPPEFLKYLEEDFSANVILIGSSGYQWQVTIFKGEK-----VYMQNGWPQVLTDNSVKSK 77
           +PP F+  LE+       L+   G  W V     +      V+   GW     D S++  
Sbjct: 25  IPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVFFTKGWQSFANDQSLEFG 84

Query: 78  ELLLFTYNGQNRFLVQFFSSNGCERQ 103
           + L+F+Y+G +RF V  F+++GC++ 
Sbjct: 85  DFLVFSYDGDSRFSVTIFANDGCKKD 110


>AT3G06220.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:1883672-1884720 REVERSE LENGTH=174
          Length = 174

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 23  VPPEFLKYLEEDFSANVILIGSSGYQWQVTIF-KGEKVYMQNGWPQVLTDNSVKSKELLL 81
           +P  + ++L        IL G+ G  W+V +  K E+VY+  GW   + DN +K  E L 
Sbjct: 25  IPRSYYEHLPRRLPKTAILTGTGGRVWKVAMMSKREQVYLARGWENFVADNELKDGEFLT 84

Query: 82  FTYNGQNRFLVQFFSSNGCERQCTKTIKHEE 112
           F ++G   + V  +    C+   T+ + H E
Sbjct: 85  FVFDGYKSYEVSIYGRGSCKE--TRAVVHVE 113


>AT4G34400.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16445323-16447596 FORWARD LENGTH=397
          Length = 397

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 23  VPPEFLKYLEEDFSANVILIGSSGYQWQV-TIFKGEKVYMQNGWPQVLTDNSVKSKELLL 81
           +P  +  ++   F   VIL G  G  W+V T  K ++V    GWP+ + DN++   + L 
Sbjct: 31  IPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLT 90

Query: 82  FTYNGQNRFLVQFF 95
           F YNG + F V  F
Sbjct: 91  FAYNGAHIFEVSIF 104


>AT3G53310.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:19766927-19768368 REVERSE LENGTH=286
          Length = 286

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 160 YPDFFKVFLPERHSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKAIPIDNQLYF 219
           YP FFKVFL E  SE +++P  F+         P+ + L+   GK+W V    I    Y 
Sbjct: 8   YPRFFKVFLVESASESLMIPLPFMAFLADP--LPKTVKLQGLGGKLWTVSLKKISGAAYL 65

Query: 220 DVGWKQFREDNCLKAANFVFLTHIESNEFKFKICESTGCERTKV 263
             GW +F E++ LK   F+   +     F+  + +  G +  + 
Sbjct: 66  TRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDRWGSKEVRA 109


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 20  LQKVPPEFLKYLEEDFSANVILIGSSGYQWQVTIFK-GEKVYMQNGWPQVLTDNSVKSKE 78
           + ++PP F+K      S  V L+  +GY+  + + + GE+++   GW +    +S++   
Sbjct: 43  MMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGH 102

Query: 79  LLLFTYNGQNRFLVQFFSSNGCE 101
            LLF Y   + F V  F+++ CE
Sbjct: 103 FLLFEYKKNSSFRVIIFNASACE 125


>AT2G35310.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:14864943-14866404 FORWARD LENGTH=288
          Length = 288

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 9   ILDKLVFCWHNLQKVPPEFLK-YLEEDFSANVILIGSSGYQWQVTIFKGEKVYM--QNGW 65
           +L ++     N++ +P +F++ +   + S  + +    G  W+V I K  + Y   ++GW
Sbjct: 22  VLQRVDISSENMRALPYDFVRSFSNNELSRKMKIKARWGSSWEVEICKNPRFYFMEKSGW 81

Query: 66  PQVLTDNSVKSKELLLFTYNGQNRFLVQFFSSNGCE 101
            + ++DN++ + E L FT+ G  RF V  F  +G E
Sbjct: 82  EKFVSDNALGASEFLTFTHKGNMRFTVNIFMQDGKE 117


>AT5G18090.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:5985467-5986925 FORWARD LENGTH=301
          Length = 301

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 20  LQKVPPEFLKYL-EEDFSANVILIGSSGYQWQVTIFKGEKVYM--QNGWPQVLTDNSVKS 76
           ++ +P  F+K + EE+ SA ++L  S G  W + I +    Y   + GW Q L+DN + +
Sbjct: 32  MRGIPLNFIKSISEEELSAKMLLKVSWGSSWPIKICRNPSFYFMEKKGWDQFLSDNGLGN 91

Query: 77  KELLLFTYNGQNRFLVQFFSSNGCE 101
            E L FT+ G   F V  +  +G E
Sbjct: 92  DEFLTFTHQGNMCFTVDIYQIDGKE 116


>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 22  KVPPEFLKYLEEDFSANVILIGSSGYQWQVTIFKGE-KVYMQNGWPQVLTDNSVKSKELL 80
           +VP +F+   +++ S  V L    G+ W+V + K + K++ Q+GW + +   S++   LL
Sbjct: 21  RVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLL 80

Query: 81  LFTYNGQNRFLVQFFSSNGCE 101
           +F Y G + F V  F+ +  E
Sbjct: 81  IFRYEGNSAFSVYIFNLSHSE 101