Miyakogusa Predicted Gene

Lj3g3v3336240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3336240.2 Non Chatacterized Hit- tr|I1MXS6|I1MXS6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43274
PE,25.52,2e-18,B3,B3 DNA binding domain; coiled-coil,NULL; B3 DNA
binding domain,B3 DNA binding domain; DNA-binding,CUFF.45599.2
         (425 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   368   e-102
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...   225   4e-59
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    83   4e-16
AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    80   3e-15
AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    69   8e-12
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    55   6e-08
AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    54   2e-07
AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    50   2e-06
AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5960071-5961473 REV...    50   4e-06
AT3G53310.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    49   5e-06
AT2G16210.2 | Symbols:  | Transcriptional factor B3 family prote...    49   6e-06
AT2G16210.1 | Symbols:  | Transcriptional factor B3 family prote...    49   1e-05

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/393 (50%), Positives = 251/393 (63%), Gaps = 55/393 (13%)

Query: 1   MPRPSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSW 60
           MPRP F+KL+  ST+Q K+LR+PD F+ K+  ELS    L+VPDG VWRVGL+KADNK W
Sbjct: 1   MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIW 60

Query: 61  LVDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNI--LATSEINYQPATRSSNEGPYFASR 118
             DGWQEFV RYSI +GYLL+FRYEG S+F+V I  L+ SEINY       +   +F  R
Sbjct: 61  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHF-KR 119

Query: 119 LKFLEEMEDEDSIEILDSSPSHLTPGSTLPNKAFPGSVDKST-PGGKSYSPPALQNLFNG 177
            +  E++EDED+ E++             P+  +P  + +ST P  K Y+  A+Q LF G
Sbjct: 120 ARLFEDLEDEDA-EVI------------FPSSVYPSPLPESTVPANKGYASSAIQTLFTG 166

Query: 178 SKLNSINRGEGGNTLSSRSANSQDKKLSRDIGVQFNAAEFKRSNEEVKLRASMEERIKKT 237
                +   E   T           K+ +  G                       R KK 
Sbjct: 167 P----VKAEEPTPT----------PKIPKKRG-----------------------RKKKN 189

Query: 238 ATKKRKSEDQEHEEEVEMRVRFYESASARKRTVTAEEREKAVNAAKEFEPPNPFCRVVLR 297
           A  +  +     +++ E R +FYESASARKRTVTAEERE+A+NAAK FEP NPF RVVLR
Sbjct: 190 ADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLR 249

Query: 298 PSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFAL 357
           PSYLYRGCIMYLPS FAEK+L+G+SGFIK+Q ++ +QWPVRCLY+ GRAK SQGW+EF L
Sbjct: 250 PSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTL 308

Query: 358 DNNLGEGDVCVFELLKVKDVALQVTLFRVTEDV 390
           +NNLGEGDVCVFELL+ +D  L+VT FRV E V
Sbjct: 309 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNEYV 341


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 121/140 (86%), Gaps = 1/140 (0%)

Query: 251 EEVEMRVRFYESASARKRTVTAEEREKAVNAAKEFEPPNPFCRVVLRPSYLYRGCIMYLP 310
           ++ E R +FYESASARKRTVTAEERE+AVNAAK FEP NP+ RVVLRPSYLYRGCIMYLP
Sbjct: 88  DDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLP 147

Query: 311 SCFAEKHLNGVSGFIKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFALDNNLGEGDVCVFE 370
           S FAEK+L+G+SGFIKLQ  + +QWPVRCLY+ GRAK SQGW+EF L+NN+GEGDVCVFE
Sbjct: 148 SGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFE 206

Query: 371 LLKVKDVALQVTLFRVTEDV 390
           LL+ +D  L+VT FRV E V
Sbjct: 207 LLRTRDFVLEVTAFRVNEYV 226


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 2   PRPSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSWL 61
           P   F+KLVLPST++ K +R+P  F++  G +LS   TL  P G    + LK+   + W 
Sbjct: 26  PVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWF 85

Query: 62  VDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNILATS--EINY 102
            +GW EF + +SI  G+ L+F Y+  SSF V I   S  E NY
Sbjct: 86  HEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNY 128


>AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6542618-6543568 FORWARD LENGTH=209
          Length = 209

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 56/97 (57%)

Query: 2   PRPSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSWL 61
           P   F+KLVLPST++ K +++P  F++  G +LS   TL  P G    + LK+   + W 
Sbjct: 26  PVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWF 85

Query: 62  VDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNILATS 98
            +GW EF + +SI  G+ L+F Y+  SSF V I   S
Sbjct: 86  HEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVS 122


>AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr1:18312983-18313748 FORWARD LENGTH=190
          Length = 190

 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 2   PRPS---FYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNK 58
           P P+   F K++L S +  K +++P  F+R +G +L+   TL  P G    + +K+  ++
Sbjct: 27  PEPTVKKFIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDE 85

Query: 59  SWLVDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNI--LATSEINY 102
            W   GW EF + +S+  G+ L F YEG S F V I  ++ SEI Y
Sbjct: 86  VWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEY 131


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 270 VTAEEREKAVNAAKEFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQT 329
           ++A   +KA++ AK    P+ F  V ++ S++   C + +P  +  K++      + +Q 
Sbjct: 202 ISAGSNKKALSLAKRAISPDGFL-VFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQV 260

Query: 330 SDGRQWPVRCLYRGGRAK--LSQGWFEFALDNNLGEGDVCVFELL--KVKDVALQVTLFR 385
            D  +W ++    G R    +S GW +F  DNNL EGDVCVFE    + K + L V +FR
Sbjct: 261 -DQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319


>AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:17122171-17124177 FORWARD LENGTH=211
          Length = 211

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 270 VTAEEREKAVNAAKEFEPP-----NPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGF 324
           V+ E R++A++ A +F+         F + +L+ S++  G  + LP  F + HL    G 
Sbjct: 84  VSEEIRDEAISRANKFQDELGSGYPSFVKSMLQ-SHVSGGFWLGLPVQFCKSHLGLHDGV 142

Query: 325 IKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFALDNNLGEGDVCVFELLKVKDVALQVTLF 384
           I L   +G ++    +Y   +  LS GW  FA+ +NL  GD  VFEL  V+  A +V + 
Sbjct: 143 ITLIDEEGEEYE--TIYLARKNGLSGGWMGFAVAHNLAYGDTLVFEL--VRRTAFKVYIT 198

Query: 385 RV 386
           RV
Sbjct: 199 RV 200


>AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:23567338-23568670 FORWARD LENGTH=273
          Length = 273

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 273 EEREKAVNAAKEFE----PPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQ 328
           EE+  A  AA++F+     P+P+    +  S++Y    + LPS F     N     ++++
Sbjct: 104 EEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCAD--NFPEETMEIE 161

Query: 329 TSDGRQWPVRCLYRGGRAKLSQGWFEFALDNNLGEGDVCVFELLKVKDVALQVTLFRVTE 388
             D        +Y G RA LS GW  FALD+ L +GD  +FEL++ K    ++ +F+  E
Sbjct: 162 LEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKK--FKIYVFKGNE 219

Query: 389 DVGLLSS 395
           +  L S+
Sbjct: 220 NANLTSA 226


>AT5G18000.1 | Symbols: VDD | VERDANDI | chr5:5960071-5961473
           REVERSE LENGTH=307
          Length = 307

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 4   PSFYKLVLPSTVQAKQLRL-PDNFMRKYGGELSPF-ATLSVPDGSVWRVGLKKADNKSWL 61
           P+F+K++       + +R+ P + +R    + S F   L VP G  W+V + K  N  ++
Sbjct: 18  PAFFKILRREDHSTEMMRMIPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYM 77

Query: 62  VD-GWQEFVQRYSIGVGYLLVFRYEGKSSFNVNIL 95
            D GW +FV    +G    L F +E    FNV I 
Sbjct: 78  EDRGWNQFVNDNGLGENEYLTFTHEANMCFNVTIF 112


>AT3G53310.1 | Symbols:  | AP2/B3-like transcriptional factor
          family protein | chr3:19766927-19768368 REVERSE
          LENGTH=286
          Length = 286

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 4  PSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSWLVD 63
          P F+K+ L  +  ++ L +P  FM      L     L    G +W V LKK    ++L  
Sbjct: 9  PRFFKVFLVESA-SESLMIPLPFMAFLADPLPKTVKLQGLGGKLWTVSLKKISGAAYLTR 67

Query: 64 GWQEFVQRYSIGVGYLLVFRYEGKSSFNVNIL 95
          GW +F + + +  G  + F Y+G  +F V++ 
Sbjct: 68 GWPKFAEEHELKNGEFMTFVYDGHRTFEVSVF 99


>AT2G16210.2 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:7027309-7028993 REVERSE LENGTH=217
          Length = 217

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 5   SFYKLVLPSTVQAKQLR-LPDNFMRKYGG-ELSPFATLSVPDGSVWRVGLKKADNKSWL- 61
           SF+K+V    V ++  R LP +F R +   ELS    +    G+ W VG+ K     ++ 
Sbjct: 18  SFFKVVQSINVSSENKRALPHDFSRSFTDKELSRKMKIRAQWGNSWEVGISKNPRFYFME 77

Query: 62  VDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNIL 95
             GW++FV+  ++G   LL F ++GK  F VNI 
Sbjct: 78  KSGWEKFVRDNALGNSELLTFTHKGKMHFTVNIF 111


>AT2G16210.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:7026996-7028993 REVERSE LENGTH=291
          Length = 291

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 5   SFYKLVLPSTVQAKQLR-LPDNFMRKYGG-ELSPFATLSVPDGSVWRVGLKKADNKSWL- 61
           SF+K+V    V ++  R LP +F R +   ELS    +    G+ W VG+ K     ++ 
Sbjct: 18  SFFKVVQSINVSSENKRALPHDFSRSFTDKELSRKMKIRAQWGNSWEVGISKNPRFYFME 77

Query: 62  VDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNIL 95
             GW++FV+  ++G   LL F ++GK  F VNI 
Sbjct: 78  KSGWEKFVRDNALGNSELLTFTHKGKMHFTVNIF 111