Miyakogusa Predicted Gene

Lj3g3v3336140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3336140.1 Non Chatacterized Hit- tr|I3ST02|I3ST02_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.32,0,seg,NULL;
coiled-coil,NULL; PspA_IM30,PspA/IM30; FAMILY NOT
NAMED,NULL,CUFF.45619.1
         (296 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally ...   364   e-101

>AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally
           active 4 | chr1:24236329-24240428 FORWARD LENGTH=330
          Length = 330

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 223/271 (82%), Gaps = 3/271 (1%)

Query: 28  CMLKK-PLTTSFLGTGTVEVLRLSGMRVVKPVRAPRRG-GARMNLFDRFARVVKSYANAV 85
           C L+  PL TSF G  +   LR++ +R+    R    G GA MNLF+RF+RVVKSYANA+
Sbjct: 31  CSLRILPLRTSFFGNSS-GALRVNVLRLACDNRLRCNGHGATMNLFERFSRVVKSYANAL 89

Query: 86  ISSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAAQQASEEWYRKAQLA 145
           ISSFEDPEKILEQ V+EMN DLTKMRQATAQVLASQK+++NKYKAAQQ+S++WY++AQLA
Sbjct: 90  ISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLA 149

Query: 146 LQKGEEDLAREALKRRKSFADNASSLKAQLDQQKGVVENLVSNTRLLESKISEARSKKDT 205
           L KG+EDLAREALKRRKSFADNA++LK QLDQQKGVV+NLVSNTRLLESKI EA++KKDT
Sbjct: 150 LAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDT 209

Query: 206 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLDGKFA 265
           L ARA++AKTATKV EM+G VNTS ALSAFEKMEEKVM MES+A+AL Q+ TD+L+GKF 
Sbjct: 210 LLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQ 269

Query: 266 LLESSSVDDDLANXXXXXXXXXXXXXXPPGR 296
           +LE+SSVDDDLA+              PPGR
Sbjct: 270 MLETSSVDDDLADLKKELSGSSKKGELPPGR 300