Miyakogusa Predicted Gene

Lj3g3v3336120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3336120.1 Non Chatacterized Hit- tr|I1LJM2|I1LJM2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37576 PE,78.59,0,no
description,NULL; coiled-coil,NULL; AARP2CN (NUC121) domain,AARP2CN;
seg,NULL; DUF663,Ribosome bi,CUFF.45627.1
         (1022 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06720.1 | Symbols:  | P-loop containing nucleoside triphosph...   674   0.0  
AT1G42440.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    82   2e-15

>AT1G06720.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr1:2060615-2067281
            REVERSE LENGTH=1147
          Length = 1147

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/596 (58%), Positives = 426/596 (71%), Gaps = 49/596 (8%)

Query: 379  GNVSKWKESLAERTLSQKTPSLMQLVYGESTANLISINKENXXXXXXXXXGD-FFEPIEE 437
            GN+S+WK  L E    +K P+LMQ+VYG S+     IN+ +          + FF+P  E
Sbjct: 539  GNISQWKAPLKE-IARKKNPNLMQIVYGASSLATPLINENHDISDDDESDDEDFFKPKGE 597

Query: 438  VKKKNVRDGFNDGNVNTEDYSKCAQFMD----KRWDKKD-NEEIRNRFVTGNLAKAALRN 492
             + KN+  G + G VN+ED   C++F++    K W +K+  E IR+RF TG+ +KAALR+
Sbjct: 598  -QHKNLGGGLDVGYVNSED---CSKFVNYGYLKNWKEKEVCESIRDRFTTGDWSKAALRD 653

Query: 493  GLPKATTEEENDDVYGDFEDLETGEKIENNQTDDTTHN-GDDLEAETRRLKKLALRAKFD 551
                   E E+D++YGDFEDLETGEK ++++  ++  N  +D +AE              
Sbjct: 654  KNLGTGGEGEDDELYGDFEDLETGEKHKSHENLESGANENEDEDAEV------------- 700

Query: 552  SRFXXXXXXXXXXXXXXXXAKFRRGQPNETSYFDKLKEEIELQKQMNIAELNDLDEATRL 611
                                   R Q +E  Y DKLKE  E+ KQ N  E NDLDE TR+
Sbjct: 701  ---------------VERDGNNPRSQADEPGYADKLKEAQEITKQRNELEYNDLDEETRI 745

Query: 612  EIEGFRTGTYVRLEVHDVPCEMVEYFDPYHPILIGGVGLGEENVGYMQARLKRHRWHKKV 671
            E+ GFRTGTY+RLE+H+VP EMVE+FDP HPIL+GG+G GE+NVGYMQARLK+HRWHKKV
Sbjct: 746  ELAGFRTGTYLRLEIHNVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRWHKKV 805

Query: 672  LKTRDPIIVSAGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFYGPLAPPNTGIVA 731
            LKTRDPIIVS GWRRYQT PV+AIED NGRHRMLKYTPEHMHCLA F+GPL PPNTG VA
Sbjct: 806  LKTRDPIIVSIGWRRYQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVA 865

Query: 732  VQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKEMFTSDLEIAR 791
             QNLSNNQA FRITAT+VVLEFNH ARIVKKIKLVG PCKI KKTA IK+MFTSDLEIAR
Sbjct: 866  FQNLSNNQAGFRITATSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIAR 925

Query: 792  FEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGITKEGIARCTFEDKILMSDIVFLRAWT 851
            FEG+++RTVSGIRGQVKKA K  + N+        +EGIARCTFED+I MSD+VFLRAWT
Sbjct: 926  FEGSSVRTVSGIRGQVKKAGKNMLDNK-------AEEGIARCTFEDQIHMSDMVFLRAWT 978

Query: 852  QVEVPQFYNLLTTALQPRDQTWKGMRTVAELRRDHDLPVPVNKDSLYKKIERKPRKFNPL 911
             VEVPQFYN LTTALQPRD+TW GM+T  ELRR+ ++P+PVNKDSLYK IERK +KFNPL
Sbjct: 979  TVEVPQFYNPLTTALQPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPL 1038

Query: 912  VVPRSLQERLPFASKPKETPKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINH 967
             +P+ L++ LPF SKPK  PKR +P LE +R   V+MEP+ERK   ++Q  QL+ H
Sbjct: 1039 QIPKRLEKDLPFMSKPKNIPKRKRPSLEDKR--AVIMEPKERKEHTIIQQFQLLQH 1092



 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 246/346 (71%), Gaps = 27/346 (7%)

Query: 1   METFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 60
           METFEFLNI+QVHGFP+VMGVLTHLDKF DVKKLRKTK  LKHRFWTEIY GAKLFYLSG
Sbjct: 163 METFEFLNIMQVHGFPRVMGVLTHLDKFNDVKKLRKTKHHLKHRFWTEIYHGAKLFYLSG 222

Query: 61  LIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLADRFEDITPPEKVHSNNKCDRKIT 120
           LIHGKY  REVHNLARF+ V+K  PL+WRT+HPYVL DR ED+TPPEKV  + KCDR IT
Sbjct: 223 LIHGKYTPREVHNLARFVIVIKPQPLTWRTAHPYVLVDRLEDVTPPEKVQMDKKCDRNIT 282

Query: 121 LYGYLRGCNLKKGNKVHIAGVGDYSLAGVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSG 180
           ++GYLRGCN KK  KVHIAGVGD+ +AGVTAL DPCPLPSA KKKGLRD++KLFYAPMSG
Sbjct: 283 VFGYLRGCNFKKRMKVHIAGVGDFIVAGVTALTDPCPLPSAGKKKGLRDRDKLFYAPMSG 342

Query: 181 LGDLLYDKDAVYININDHFVQFSKVDDENSAITRKGNERDIGEVLVRSLQETKYPINEKL 240
           +GDL+YDKDAVYININ H VQ+SK DD     T KG  RD+GE LV+SLQ TKY ++EKL
Sbjct: 343 IGDLVYDKDAVYININSHQVQYSKTDDGKGEPTNKGKGRDVGEDLVKSLQNTKYSVDEKL 402

Query: 241 ENSMINLFAQSSEALAEAQGTNMDVEQDGIIETVDYNEMXXXXXXXXXXXXXXXXMTGSG 300
           + + IN F + + A +E +    D           Y+ +                  GS 
Sbjct: 403 DKTFINFFGKKTSASSETKLKAEDA----------YHSLPE----------------GSD 436

Query: 301 LPDQAEDDAAGDKSTNKDHLEEHIEFHNGRRRRRAIFGNDADQSDL 346
              Q+ DD   D   N+  +++  E H GR RR+AIF  D ++ D 
Sbjct: 437 SESQSGDDEE-DIVGNESEMKQETEIHGGRLRRKAIFKTDLNEDDF 481


>AT1G42440.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN
           (InterPro:IPR012948), Protein of unknown function DUF663
           (InterPro:IPR007034); BEST Arabidopsis thaliana protein
           match is: P-loop containing nucleoside triphosphate
           hydrolases superfamily protein (TAIR:AT1G06720.1); Has
           2741 Blast hits to 2088 proteins in 291 species: Archae
           - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants
           - 171; Viruses - 49; Other Eukaryotes - 905 (source:
           NCBI BLink). | chr1:15895528-15899939 REVERSE LENGTH=793
          Length = 793

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 20/237 (8%)

Query: 619 GTYVRLEVHDVP----CEMVEYFDPYHPILIGGVGLGEENVGYMQARLKRHRWHKKVLKT 674
           G+YVRL + +VP     ++    +   PI+  G+   E  +  +   +K++  ++  +KT
Sbjct: 556 GSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMSVLHFSVKKYDGYEAPIKT 615

Query: 675 RDPIIVSAGWRRYQTTPVYAIEDHNG-RHRMLKYTPEHMHCLAMFYGPLAPPNTGIVAVQ 733
           ++ ++   G+R++   PV+A ++ +  +H+M ++       LA  YGP++ P   +V ++
Sbjct: 616 KEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSLASIYGPISFPPLPLVVLK 675

Query: 734 NLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKEMFTSDLEIARFE 793
            +S       I A   +        I+KKI L GYP ++ K  A ++ MF +  ++  F+
Sbjct: 676 -ISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMKASVRYMFHNPEDVKWFK 734

Query: 794 GAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGITKEGIARCTFEDKILMSDIVFLRAW 850
              + +  G RG+V    KE +G            G  +C F   +   D+V +  +
Sbjct: 735 PVEVWSKCGRRGRV----KEPVGTH----------GAMKCIFNGVVQQHDVVCMNLY 777



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 5   EFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 64
           + L++ +  G P    ++  L    DVKK  + K+    +  +E  +  K FY +     
Sbjct: 172 QCLSVFRSIGLPSTTVLIRDLPS--DVKKKNEMKKMCASQLASEFPEDCK-FYPAD---- 224

Query: 65  KYVKREVHNLARFISVMKFHPLSWRTSHPYVLADRFEDITPPEKVHSNNKCDRKITLYGY 124
              + E+H         +     WR+   Y++A +   +   E   S+ KC   + L GY
Sbjct: 225 --TRDELHKFMWLFKAQRLTVPHWRSQRSYIVARKAGMLVDDE---SSGKC--TLLLSGY 277

Query: 125 LRGCNLKKGNKVHIAGVGDYSLAGVTALPDPCPL 158
           LR   L     VH++GVGD+  + +  L DP PL
Sbjct: 278 LRARKLSVNQLVHVSGVGDFQFSKIEVLKDPFPL 311