Miyakogusa Predicted Gene
- Lj3g3v3314940.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3314940.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,31.58,0.0000000000004,PPR,Pentatricopeptide repeat; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PPR: pentatricopeptid,CUFF.45562.1
(173 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 134 3e-32
AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 5e-10
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 1e-09
AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 59 1e-09
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 2e-09
AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 3e-09
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ... 58 4e-09
AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 5e-09
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 3e-08
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 3e-08
AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 3e-08
AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 3e-08
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su... 54 4e-08
AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 4e-08
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 5e-08
AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 5e-08
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 54 6e-08
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 54 6e-08
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381... 54 8e-08
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 1e-07
AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 53 1e-07
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 1e-07
AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 1e-07
AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 1e-07
AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 1e-07
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 2e-07
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 2e-07
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 2e-07
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 2e-07
AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;helic... 52 3e-07
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 3e-07
AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 3e-07
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 4e-07
AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 4e-07
AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 4e-07
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 51 5e-07
AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 5e-07
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 5e-07
AT2G19280.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 6e-07
AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 6e-07
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 6e-07
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 7e-07
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 7e-07
AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 7e-07
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 9e-07
AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 9e-07
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 1e-06
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 2e-06
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 2e-06
AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 3e-06
AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 48 3e-06
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 3e-06
AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 4e-06
AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 5e-06
AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 7e-06
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 7e-06
AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 8e-06
AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 47 9e-06
AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 9e-06
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
+E YT++INAYC +G+L KA +L +E+ G + + V Y V INGL+K++RTREAK +L
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
L L Y S + + TLIENC+N EF S+V L+KGF + ++ EA V +ML N+
Sbjct: 579 LKLFYEE--SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNH 636
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNMY 172
KPDG YN++I HC ++ KAY +Y
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLY 663
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 26/157 (16%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N ++Y VIN C +G + + +L E+ G + V Y I G K+ +A M
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN----------------------CTNNEFMSLVELVKG 123
++ H S + + +LI + C N + LV G
Sbjct: 334 AEMLRHGLTP--SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER--TYTTLVDG 389
Query: 124 FQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHC 160
F ++ +NEA VL M + P YN LI HC
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
>AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24123983-24126706 REVERSE
LENGTH=907
Length = 907
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 11 GYGYDSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFIN 70
+G L EG + NEV YT+VIN C G + +A+ L ++ V V YG F++
Sbjct: 701 AFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLD 760
Query: 71 GLDKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLV 130
L T+ +M ++ HN I L+ N L++GF ++ +
Sbjct: 761 IL-----TKGEVDMQKAVELHNA-------ILKGLLANTATYNM-----LIRGFCRQGRI 803
Query: 131 NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
EA+ ++ M+ PD Y +I E C +V KA ++
Sbjct: 804 EEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELW 845
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V Y +I YC +G++ KA + L E+T G V + Y I+GL + EAK +
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV 600
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
L NC L E C L+ GF + + EA SV M+Q
Sbjct: 601 DGLHKGNCE----------LNEICYTG-------LLHGFCREGKLEEALSVCQEMVQRGV 643
Query: 146 KPDGAVYNLLI 156
D Y +LI
Sbjct: 644 DLDLVCYGVLI 654
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 29 NYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLSL 88
+ V+ A+CA E+ A LL ++T G V VIY I+ L K R EA ++L +
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 89 VYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKPD 148
C T V L G K D +NEAA ++N ML + PD
Sbjct: 279 FLMGCVPDAETFNDVIL-----------------GLCKFDRINEAAKMVNRMLIRGFAPD 321
Query: 149 GAVYNLLIVEHCSLRNVDKAYNMY 172
Y L+ C + VD A +++
Sbjct: 322 DITYGYLMNGLCKIGRVDAAKDLF 345
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 21 EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTRE 80
EG + N V Y ++INA+ GE+ +A KL++E+ G + + Y I GL + +
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 81 AKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTM 140
A+ + F ++ + +S L+ G + +V EA M
Sbjct: 583 ARSL-----------------FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625
Query: 141 LQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+ PD +N LI C ++ M+
Sbjct: 626 VLRGSTPDIVTFNSLINGLCRAGRIEDGLTMF 657
>AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3218133-3219929 FORWARD
LENGTH=598
Length = 598
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
+ YT +I A C D + A KLLDE+ + G + V Y V +NG+ K+ R EA + L
Sbjct: 240 ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND 299
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELV-----KGFQ--------------KRD 128
+ C+ P + L C+ +M +L+ KGF ++
Sbjct: 300 MPSSGCQ-PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358
Query: 129 LVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
L+ A +L M Q +P+ YN L+ C + +D+A
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRA 398
>AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD
LENGTH=257
Length = 257
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 17 LFTE---EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLD 73
LFTE +G N + Y +I+++C G AD+LL + + V + IN
Sbjct: 32 LFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFV 91
Query: 74 KKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEA 133
K+ + EA+E+ ++ WS IF T I T N ++ GF K+D V++A
Sbjct: 92 KERKVSEAEEIYKEMLR------WS--IFPTTI---TYNS------MIDGFCKQDRVDDA 134
Query: 134 ASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+L++M PD ++ LI +C + VD ++
Sbjct: 135 KRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIF 173
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V ++++INA+ + ++ +A+++ E+ + + Y I+G K+ R +AK ML S
Sbjct: 81 VTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDS 140
Query: 88 LVYHNCRD---PWSTL---------------IFVTLIENCTNNEFMSLVELVKGFQKRDL 129
+ C +STL IF + ++ L+ GF +
Sbjct: 141 MASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGD 200
Query: 130 VNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAY 169
++ A +LN M+ PD ++ ++ CS + + KA+
Sbjct: 201 LDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAF 240
>AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:23195609-23198524 REVERSE
LENGTH=971
Length = 971
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 16 SLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKK 75
S G LN + Y S+IN C G LV+A +L D L N G V V YG+ I+ L K+
Sbjct: 679 SFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKE 738
Query: 76 ARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAAS 135
+A+++L S+V L+ +I N +V G+ K +A
Sbjct: 739 GLFLDAEKLLDSMVSKG-------LVPNIIIYN----------SIVDGYCKLGQTEDAMR 781
Query: 136 VLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
V++ + G PD + +I +C ++++A +++
Sbjct: 782 VVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVF 818
>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10868400-10870382 REVERSE
LENGTH=660
Length = 660
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 15 DSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDK 74
D++F + G + NEV Y ++I+ C G+L KA LL+ + + + V YG INGL K
Sbjct: 281 DNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 75 KARTREAKEMLLSLV---YHNCRDPWSTLIFVTLIENCTNNEFMSLVE------------ 119
+ R +A +L S+ YH + +S LI L + E MSL
Sbjct: 340 QRRATDAVRLLSSMEERGYHLNQHIYSVLI-SGLFKEGKAEEAMSLWRKMAEKGCKPNIV 398
Query: 120 ----LVKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLI 156
LV G + NEA +LN M+ P+ Y+ L+
Sbjct: 399 VYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 16 SLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKK 75
S E G LN+ Y+ +I+ +G+ +A L ++ G V+Y V ++GL ++
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 76 ARTREAKEMLLSLVYHNCRD---PWSTLI---FVT-LIE------------NCTNNEFMS 116
+ EAKE+L ++ C +S+L+ F T L E C+ N+F
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCY 470
Query: 117 LVELVKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
V L+ G V EA V + ML KPD Y+ +I C + ++D A +Y
Sbjct: 471 SV-LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525
>AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23451144-23452201 FORWARD
LENGTH=323
Length = 323
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 20/159 (12%)
Query: 17 LFTE---EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLD 73
LFTE +G + + Y+ +I+++C G A++LL ++ + V + IN L
Sbjct: 98 LFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALV 157
Query: 74 KKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEA 133
K+ + EA+E+ ++ IF T I T N ++ GF K+D +N+A
Sbjct: 158 KEGKVSEAEEIYGDMLRRG--------IFPTTI---TYNS------MIDGFCKQDRLNDA 200
Query: 134 ASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+L++M + PD ++ LI +C + VD ++
Sbjct: 201 KRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF 239
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V ++++INA +G++ +A+++ ++ G + Y I+G K+ R +AK ML S
Sbjct: 147 VTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDS 206
Query: 88 LVYHNCRD---PWSTL---------------IFVTLIENCTNNEFMSLVELVKGFQKRDL 129
+ +C +STL IF + ++ L+ GF +
Sbjct: 207 MASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGD 266
Query: 130 VNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAY 169
++ A +LN M+ P+ + ++ CS + + KA+
Sbjct: 267 LDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAF 306
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 22 GGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREA 81
G + V +TS+I+ YC G++ + +L +E+ G Y + IN L + R +A
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKA 401
Query: 82 KEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTML 141
+E+L L + +I + N ++ GF K VNEA ++ M
Sbjct: 402 RELLGQLASKD-------IIPQPFMYN----------PVIDGFCKAGKVNEANVIVEEME 444
Query: 142 QGNYKPDGAVYNLLIVEHC 160
+ KPD + +LI+ HC
Sbjct: 445 KKKCKPDKITFTILIIGHC 463
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 22 GGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREA 81
G + V +TS+I+ YC G++ + +L +E+ G Y + IN L + R +A
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKA 401
Query: 82 KEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTML 141
+E+L L + +I + N ++ GF K VNEA ++ M
Sbjct: 402 RELLGQLASKD-------IIPQPFMYN----------PVIDGFCKAGKVNEANVIVEEME 444
Query: 142 QGNYKPDGAVYNLLIVEHC 160
+ KPD + +LI+ HC
Sbjct: 445 KKKCKPDKITFTILIIGHC 463
>AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13930379-13932493 FORWARD
LENGTH=704
Length = 704
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V YTS+I +C GEL + L DE+ GD + Y I G K + +EA E
Sbjct: 248 VVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASE---- 303
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
IF +IE + L+ G EA +LN M++ + +P
Sbjct: 304 -------------IFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEP 350
Query: 148 DGAVYNLLIVEHC 160
+ YN++I + C
Sbjct: 351 NAVTYNIIINKLC 363
>AT1G63320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23488884-23489530 REVERSE
LENGTH=189
Length = 189
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Query: 19 TEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
++ G + N V YT++I G+ A ++ E+ + G + + Y + ++GL K +
Sbjct: 8 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKL 67
Query: 79 REAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
+A LV D W +F +L ++ ++ GF K+ EA ++
Sbjct: 68 EKA------LVAGKVEDGWD--LFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFR 119
Query: 139 TMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
M + PD YN LI H LR+ DKA
Sbjct: 120 KMKEDGPLPDSGTYNTLIRAH--LRDGDKA 147
>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19900303-19902567 FORWARD
LENGTH=754
Length = 754
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
+E Y +I++ C+ G+L +A +L ++ G + + Y I+G K +TREA+E+
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
+ H +++ + TLI+ G K V +AA +++ M+
Sbjct: 494 DEMEVHGVS--RNSVTYNTLID---------------GLCKSRRVEDAAQLMDQMIMEGQ 536
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNM 171
KPD YN L+ C ++ KA ++
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADI 562
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
++G ++ + +++N C G + A +++D + G + Y I+GL K +
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVK 347
Query: 80 EAKEMLLSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
EA E+L ++ +C +T+ + TLI C N+ EL + + ++ + + N
Sbjct: 348 EAVEVLDQMITRDCSP--NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT-FN 404
Query: 139 TMLQG-----NYK---------------PDGAVYNLLIVEHCSLRNVDKAYNM 171
+++QG N++ PD YN+LI CS +D+A NM
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
>AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:326136-327815 REVERSE
LENGTH=559
Length = 559
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 35/140 (25%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDK--------KAR 77
N+V YT +I+A C +G+ ++ ++L +++ G V + +Y +I GL K K +
Sbjct: 402 NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLK 461
Query: 78 TREAKE-MLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASV 136
TR +E +LL L+ ++TLI+ G + L+ EA V
Sbjct: 462 TRMVQEGLLLDLL------AYTTLIY--------------------GLASKGLMVEARQV 495
Query: 137 LNTMLQGNYKPDGAVYNLLI 156
+ ML PD AV++LLI
Sbjct: 496 FDEMLNSGISPDSAVFDLLI 515
>AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2766367-2768430 REVERSE
LENGTH=687
Length = 687
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 5 NDYMFSGYGYDSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVI 64
N Y+ G GG L+ Y S+I+ C L +A L+ E++ G +
Sbjct: 407 NGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHV 466
Query: 65 YGVFINGLDKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGF 124
I GL + +R EA L + + CR T++ + L+ G
Sbjct: 467 CNALIGGLIRDSRLGEASFFLREMGKNGCR---PTVVSYNI--------------LICGL 509
Query: 125 QKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
K EA++ + ML+ +KPD Y++L+ C R +D A ++
Sbjct: 510 CKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELW 557
>AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29068620-29069828 REVERSE
LENGTH=402
Length = 402
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N YT +I+A C G+ +A L +++ G + +Y V I EA
Sbjct: 259 NVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEAS--- 315
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
L+ H ++EN ++ L+KGF K++ V++A +L+ ML+ N
Sbjct: 316 -GLLEH-------------MLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNL 360
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNM 171
PD YN LI CS N+D AY +
Sbjct: 361 VPDLITYNTLIAGQCSSGNLDSAYRL 386
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 20 EEGGL-LNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
E GL + V YT++++AYC GE+ KA ++L E+ G V + V +NG
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Query: 79 REAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
+ +++L + ++ + N T + LVK + R+ + A ++
Sbjct: 578 EDGEKLL------------NWMLAKGIAPNAT-----TFNSLVKQYCIRNNLKAATAIYK 620
Query: 139 TMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
M PDG Y L+ HC RN+ +A+ ++
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 5 NDYMFSGYGYDSL-----FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDV 59
N Y +G+ D+ + G N V YT++I+ C +G+L A++LL E+ G
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 60 QEPVIYGVFINGLDKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLV 118
Y +NGL K EA +++ T+ + TL++ C + E
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA--DTVTYTTLMDAYCKSGEMDKAQ 546
Query: 119 ELVK-------------------GFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEH 159
E++K GF ++ + +LN ML P+ +N L+ ++
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Query: 160 CSLRNVDKAYNMY 172
C N+ A +Y
Sbjct: 607 CIRNNLKAATAIY 619
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
++Y++V+N YC GEL K KL++ + G IYG I L + + EA+E
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
++ T+++ TLI+ GF KR + A+ M + P
Sbjct: 342 MIRQGILP--DTVVYTTLID---------------GFCKRGDIRAASKFFYEMHSRDITP 384
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D Y +I C + ++ +A ++
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLF 409
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 20 EEGGL-LNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
E GL + V YT++++AYC GE+ KA ++L E+ G V + V +NG
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Query: 79 REAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
+ +++L + ++ + N T + LVK + R+ + A ++
Sbjct: 578 EDGEKLL------------NWMLAKGIAPNAT-----TFNSLVKQYCIRNNLKAATAIYK 620
Query: 139 TMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
M PDG Y L+ HC RN+ +A+ ++
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 5 NDYMFSGYGYDSL-----FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDV 59
N Y +G+ D+ + G N V YT++I+ C +G+L A++LL E+ G
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 60 QEPVIYGVFINGLDKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLV 118
Y +NGL K EA +++ T+ + TL++ C + E
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNA--DTVTYTTLMDAYCKSGEMDKAQ 546
Query: 119 ELVK-------------------GFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEH 159
E++K GF ++ + +LN ML P+ +N L+ ++
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Query: 160 CSLRNVDKAYNMY 172
C N+ A +Y
Sbjct: 607 CIRNNLKAATAIY 619
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
++Y++V+N YC GEL K KL++ + G IYG I L + + EA+E
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
++ T+++ TLI+ GF KR + A+ M + P
Sbjct: 342 MIRQGILP--DTVVYTTLID---------------GFCKRGDIRAASKFFYEMHSRDITP 384
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D Y +I C + ++ +A ++
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLF 409
>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
chr2:16381647-16384250 FORWARD LENGTH=867
Length = 867
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 22 GGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREA 81
G ++ + TS++N YC EL KA L + + G + V++ V + K +A
Sbjct: 340 GIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKA 399
Query: 82 KEMLLSLVYHNCRDPWSTLIFVTLIENCT------------NNEFMSLV-------ELVK 122
E + + + R S+++ T+I+ C N+ F S + ++
Sbjct: 400 IEFYMRM--KSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFL 457
Query: 123 GFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
F K+ V+ A S L M Q +P+ YN +++ HC ++N+D A +++
Sbjct: 458 LFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIF 507
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 19 TEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
EEG N + Y ++ +C GE+ KA +LLDE++ G V Y I+G K
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 79 REA----KEMLL------SLVYHNCRDPWSTL--------IFVTLIENCTNN--EFMSLV 118
EA EM L S VY D L IF T + C ++ F +L+
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALI 773
Query: 119 ELVKGFQKRDLVNEAASVLNTMLQGNY----KPDGAVYNLLIVEHCSLRNVDKAYNMY 172
V F K +L E VLN ++ G++ KP+ YN++I C N++ A ++
Sbjct: 774 NWVFKFGKTELKTE---VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELF 828
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
E G L N+V T +IN YC G++++A + + G + + Y V +NGL K +
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609
Query: 80 EAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNT 139
+A+E IF + + S L+ GF K + +A+S+ +
Sbjct: 610 DAEE-----------------IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 140 MLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
M++ P+ +YN+L+ C ++KA
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
>AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:10786948-10789053 REVERSE
LENGTH=701
Length = 701
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N +N+TS+I+ C G + +A ++L+E+ G + I+GL K+ T +A +
Sbjct: 286 NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 345
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
L LV + P + ++ G+ K D +N A + + M +
Sbjct: 346 LKLVRSDTYKP----------------NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 389
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNM 171
P+ Y LI HC + +AY +
Sbjct: 390 FPNVNTYTTLINGHCKAGSFGRAYEL 415
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V S++N +C + A L+ ++ G + + I+GL + R EA ++
Sbjct: 152 VTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDR 211
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ T V V G KR ++ A S+L M QG +P
Sbjct: 212 MVVKGCQPDLVTYGIV-----------------VNGLCKRGDIDLALSLLKKMEQGKIEP 254
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
+YN +I C+ +NV+ A N++
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLF 279
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V ++++I+A+ +G+LV+A+KL DE+ + Y ING R EAK M
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
++ +C F ++ T L+KGF K V+E + M Q
Sbjct: 385 ELMISKDC--------FPNVVTYNT---------LIKGFCKAKRVDEGMELFREMSQRGL 427
Query: 146 KPDGAVYNLLIVEHCSLRNVDKA 168
+ Y LI R D A
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNA 450
>AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:18694316-18695734 REVERSE
LENGTH=472
Length = 472
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V YTS+IN C + +A + L+E+ + G Y ++GL K R+ +A E+
Sbjct: 228 VTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEM 287
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTM-LQGNYK 146
++ CR ++ L+ G K + EA +L+ M LQG K
Sbjct: 288 MMARGCRP-----------------NMVTYTTLITGLCKEQKIQEAVELLDRMNLQG-LK 329
Query: 147 PDGAVYNLLIVEHCSLRNVDKAYN 170
PD +Y +I C++ +A N
Sbjct: 330 PDAGLYGKVISGFCAISKFREAAN 353
>AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2399117-2400496 REVERSE
LENGTH=459
Length = 459
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V Y S+I C + ++ KA LL+++ V +G+ + GL K EAK+++
Sbjct: 222 VTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFD 281
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+ Y C+ ++ L+ KR ++EA +L M + KP
Sbjct: 282 MEYRGCKP-----------------GLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKP 324
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNM 171
D +YN+L+ C+ V +AY +
Sbjct: 325 DVVIYNILVNHLCTECRVPEAYRV 348
>AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:22598038-22601688 FORWARD
LENGTH=1136
Length = 1136
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 19 TEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
T +G L N V++ +IN Y GE +KA + DE+T G YG + GL K
Sbjct: 575 TSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 634
Query: 79 REAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
REA++ L SL H T+++ TL+ K + +A S+
Sbjct: 635 REAEKFLKSL--HAVPAAVDTVMYNTLLT---------------AMCKSGNLAKAVSLFG 677
Query: 139 TMLQGNYKPDGAVYNLLIVEHC 160
M+Q + PD Y LI C
Sbjct: 678 EMVQRSILPDSYTYTSLISGLC 699
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 13 GYDSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGL 72
G+ G + + YT +I+ C +G L +A LL+E++ G + V Y ING
Sbjct: 429 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 488
Query: 73 DKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNE 132
K R + AKE++ +Y P + +I+ TLI NC + + E
Sbjct: 489 CKVGRFKTAKEIVCR-IYRVGLSP-NGIIYSTLIYNCC---------------RMGCLKE 531
Query: 133 AASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
A + M+ + D +N+L+ C V +A
Sbjct: 532 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 567
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
NEV Y ++IN + +G+++ A +LL+E+ +FG V + I+G + +EA +M
Sbjct: 337 NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF 396
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEF-------------------MSLVELVKGFQK 126
++ P V L C N EF ++ ++ G K
Sbjct: 397 Y-MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 455
Query: 127 RDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
++EA +LN M + PD Y+ LI C + A
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTA 497
>AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD
LENGTH=871
Length = 871
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
E+G +L+ Y VI+ +C G++ KA +LL+E+ G V YG I+GL K R
Sbjct: 580 EQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLD 639
Query: 80 EA---------KEMLLSLVYHNC---------RDPWSTLIFVTLIENCTNNEFMSLVELV 121
EA K + L++V ++ R + LI L++ + L+
Sbjct: 640 EAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLL 699
Query: 122 KGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAY 169
K + +NEA +M + P+ Y +LI C +R +KA+
Sbjct: 700 DALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 18 FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKAR 77
TE G N V YT++I+ C GE+ KA L E+ G V Y V INGL K
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 78 TREAKEM---------LLSLVYHNC---------RDPWSTLIFVTLIENCTNNEFMSLVE 119
++ EM +L +NC R + +F + E + ++
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308
Query: 120 LVKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNM 171
L+ G + +NEA V++ M P+ YN LI C + + KA ++
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N + Y ++I+ +C G+L KA L +L + G V Y + ++G +K T A +M+
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFM--------SLVE------------LVKGFQ 125
+ + S + + LI+ ++ M S+ E L+ GF
Sbjct: 397 KEMEERGIKP--SKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454
Query: 126 KRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHC 160
+ +NEA+ + +M++ N +P+ +YN +I+ +C
Sbjct: 455 IKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYC 489
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 18/163 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V YT++I++ C +G + A L D++ N+G + V+Y +NGL R R+A +L
Sbjct: 178 VMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRG 237
Query: 88 LVYHNCRDPWSTL------------------IFVTLIENCTNNEFMSLVELVKGFQKRDL 129
+ + T ++ +I + L+ GF
Sbjct: 238 MTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297
Query: 130 VNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
V+EA + M PD Y LI C + VD A ++
Sbjct: 298 VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIF 340
>AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:7966066-7967925 REVERSE
LENGTH=619
Length = 619
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 16 SLFTE---EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGL 72
SLF E +G + V Y+S+I C DG+ K+L E+ + + V + I+
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 73 DKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNE 132
K+ + EAKE+ + +I + ++ L+ GF K + ++E
Sbjct: 326 VKEGKLLEAKEL-----------------YNEMITRGIAPDTITYNSLIDGFCKENCLHE 368
Query: 133 AASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
A + + M+ +PD Y++LI +C + VD ++
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 18 FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKAR 77
+ +G + N + Y +++ +C G+L A +L E+ + G V YG+ ++GL
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 78 TREAKEM--------------LLSLVYH------NCRDPWSTLIFVTLIENCTNNEFMSL 117
+A E+ + +++ H D WS +F +L + + ++
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS--LFCSLSDKGVKPDVVTY 528
Query: 118 VELVKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEH 159
++ G K+ ++EA + M + PD YN+LI H
Sbjct: 529 NVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
>AT1G12700.1 | Symbols: | ATP binding;nucleic acid
binding;helicases | chr1:4323722-4326227 REVERSE
LENGTH=735
Length = 735
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 18 FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKAR 77
++ G + N V Y+ ++ +C G++ A++L E+ + G + + + YG+ ++GL +
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 78 TREAKE---------------MLLSLVYHNCR-----DPWSTLIFVTLIENCTNNEFMSL 117
+A E M +++ C+ D W+ +F +L M+
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN--LFCSLPCKGVKPNVMTY 511
Query: 118 VELVKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVD 166
++ G K+ ++EA +L M + P+ YN LI H LR+ D
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH--LRDGD 558
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 21/154 (13%)
Query: 20 EEGGLLNEVN-YTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKART 78
EE G+ ++ YT +I++ C+ + KA +LL ++ G + + Y ING K+
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 79 REAKEMLLSLVYHNCRDPWSTLIFVTLIENCT-NNEFMSLVELVKGFQKRDLVNEAASVL 137
+A ++ V L+E+ + + EL+KG+ K + V++A VL
Sbjct: 410 EDAVDV------------------VELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVL 450
Query: 138 NTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNM 171
N ML+ PD YN LI C N D AY +
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
>AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:8128086-8130242 REVERSE
LENGTH=718
Length = 718
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVI-YGVFINGLDKKARTREAKEMLL 86
V+Y ++++ Y G+ V+A L D+L GD+ ++ Y I+GL + A+ +
Sbjct: 375 VSYNTLMHGYIKMGKFVEASLLFDDLRA-GDIHPSIVTYNTLIDGLCESGNLEGAQRLKE 433
Query: 87 SLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYK 146
+ + LIF +I T LVKGF K ++ A V + ML+ K
Sbjct: 434 EMT--------TQLIFPDVITYTT---------LVKGFVKNGNLSMATEVYDEMLRKGIK 476
Query: 147 PDGAVYNLLIVEHCSLRNVDKAYNMY 172
PDG Y V L + DKA+ ++
Sbjct: 477 PDGYAYTTRAVGELRLGDSDKAFRLH 502
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily
protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
12380 proteins in 263 species: Archae - 4; Bacteria -
27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
- 0; Other Eukaryotes - 935 (source: NCBI BLink). |
chr4:575843-577243 REVERSE LENGTH=466
Length = 466
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 29 NYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS- 87
+Y +I +C G++ A +LLD++ N G V + + Y +N L +K + REA ++L
Sbjct: 227 SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRM 286
Query: 88 --------LVYHN------CRDPW---STLIFVTLIENCTNNEFMSLVELVKGFQKRDLV 130
LV++N CR+ + + ++ N + +S L+ G + +
Sbjct: 287 KLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346
Query: 131 NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
+E L M+ + P +V N L+ CS V++A
Sbjct: 347 DEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384
>AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6666249-6668963 FORWARD
LENGTH=904
Length = 904
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 17 LFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKA 76
L +E G N V YTS+I YC G + +A+ + + L V + +YGV ++G +
Sbjct: 286 LMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTG 345
Query: 77 RTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASV 136
+ R+A + +++ R TN + L+ G+ K + EA +
Sbjct: 346 QIRDAVRVHDNMIEIGVR---------------TNTTICN--SLINGYCKSGQLVEAEQI 388
Query: 137 LNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNM 171
+ M + KPD YN L+ +C VD+A +
Sbjct: 389 FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKL 423
>AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:890428-892410 REVERSE
LENGTH=660
Length = 660
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 11 GYGYDSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFIN 70
GY +G N YT +I+ Y G + A +LL + + G + V Y V +N
Sbjct: 346 GYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN 405
Query: 71 GLDKKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLV 130
GL K R EA + +H CR F L N+ F S L+ G K V
Sbjct: 406 GLCKNGRVEEALD-----YFHTCR-------FDGL---AINSMFYS--SLIDGLGKAGRV 448
Query: 131 NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+EA + M + D YN LI R VD+A ++
Sbjct: 449 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V +S++N YC + +A L+D++ G V + I+GL + EA ++
Sbjct: 150 NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALI 209
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
+V C+ T V V G KR + A ++LN M QG
Sbjct: 210 DRMVAKGCQPDLVTYGVV-----------------VNGLCKRGDTDLAFNLLNKMEQGKL 252
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+P +YN +I C +++D A N++
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLF 279
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 29 NYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLSL 88
++++I+A+ +G+LV+A+KL DE+ V Y ING R EAK+M +
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387
Query: 89 VYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKPD 148
V +C F ++ T L+KGF K V E V M Q +
Sbjct: 388 VSKHC--------FPDVVTYNT---------LIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Query: 149 GAVYNLLI 156
YN+LI
Sbjct: 431 TVTYNILI 438
>AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:550340-552625 REVERSE
LENGTH=761
Length = 761
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 22 GGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREA 81
G + NE YTS+I+A C G L A +L +E+ G V Y I+GL R +EA
Sbjct: 397 GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 82 KEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTML 141
+E+ + + +I N S L+ GF K ++ A +LN +
Sbjct: 457 EEL------------FGKMDTAGVIPN-----LASYNALIHGFVKAKNMDRALELLNELK 499
Query: 142 QGNYKPDGAVYNLLIVEHCSLRNVDKA 168
KPD +Y I CSL ++ A
Sbjct: 500 GRGIKPDLLLYGTFIWGLCSLEKIEAA 526
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V S++N +C + +A L+D++ G + V + ++GL + + EA ++
Sbjct: 136 VTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 195
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ + ++ ++ G KR + A ++LN M +G +
Sbjct: 196 MVVKGCQP-----------------DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 238
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D +Y+ +I C R+VD A N++
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLF 263
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V + S+I+A+ +G+L++A+KL DE+ V Y ING R EA+++
Sbjct: 309 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 368
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLVELVKGFQKRDLV-------------- 130
+V +C T + TLI C + + +EL + +R LV
Sbjct: 369 TLMVSKDCLPDVVT--YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426
Query: 131 -----NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
+ A V M+ P+ YN L+ C ++KA
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469
>AT2G19280.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:8362672-8364753 FORWARD
LENGTH=693
Length = 693
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 21 EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTRE 80
EG L+ V Y ++++ Y +L K +L+DE+ + G + Y + I+ + + E
Sbjct: 472 EGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDE 531
Query: 81 AKEMLLSLVYHNCRDPWSTLIFVTLIENCTNN--------------------EFMSLVEL 120
A E++ L+ STL F +I + + ++ L
Sbjct: 532 ANEIISELIRRGFVP--STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSAL 589
Query: 121 VKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
+ G+ K + +A + N +L KPD +YN LI +CS+ +++KA
Sbjct: 590 LHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKA 637
>AT2G19280.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:8362672-8364753 FORWARD
LENGTH=693
Length = 693
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 21 EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTRE 80
EG L+ V Y ++++ Y +L K +L+DE+ + G + Y + I+ + + E
Sbjct: 472 EGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDE 531
Query: 81 AKEMLLSLVYHNCRDPWSTLIFVTLIENCTNN--------------------EFMSLVEL 120
A E++ L+ STL F +I + + ++ L
Sbjct: 532 ANEIISELIRRGFVP--STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSAL 589
Query: 121 VKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
+ G+ K + +A + N +L KPD +YN LI +CS+ +++KA
Sbjct: 590 LHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKA 637
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V ++ +I+++ +G+L +AD+LL E+ G + Y I+G K+ R EA +M+
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV 391
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN-CTNNEF---------MSLV----------ELVKGFQ 125
++ C DP + F LI C N MSL LV+GF
Sbjct: 392 DLMISKGC-DP-DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFC 449
Query: 126 KRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+ + A + M+ +PD Y +L+ C ++KA ++
Sbjct: 450 QSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIF 496
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 24/164 (14%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V ++++I+A+ +G+LV+A+KL DE+ + Y ING R EAK M
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGN 144
++ +C + + + TLI+ C +EL + +R LV + NT++QG
Sbjct: 384 ELMISKDCFP--NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY-NTLIQGL 440
Query: 145 YK--------------------PDGAVYNLLIVEHCSLRNVDKA 168
++ PD Y++L+ C ++KA
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484
>AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23299060-23300958 FORWARD
LENGTH=632
Length = 632
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V +S++N YC + A L+D++ G + + I+GL + EA ++
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ + ++ +V G KR ++ A S+L M +G +
Sbjct: 214 MVQRGCQP-----------------DLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 256
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D +YN +I C +++D A N++
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLF 281
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V ++++I+A+ +G+LV+A+KL DE+ + Y ING R EAK M
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
++ +C F ++ T L+KGF K V E + M Q
Sbjct: 387 ELMISKDC--------FPNVVTYST---------LIKGFCKAKRVEEGMELFREMSQRGL 429
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+ Y LI R+ D A ++
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVF 456
>AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10670320-10672740 REVERSE
LENGTH=806
Length = 806
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V YT+V+N +C GE+ KA KLL + G V Y +NG+ + ++ EA+EM+
Sbjct: 455 VTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNM 514
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
H WS N+ S++ + G ++ ++EA V+ M+ + P
Sbjct: 515 SEEHW----WS-----------PNSITYSVI--MHGLRREGKLSEACDVVREMVLKGFFP 557
Query: 148 DGAVYNLLIVEHC 160
NLL+ C
Sbjct: 558 GPVEINLLLQSLC 570
>AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227574-23229031 FORWARD
LENGTH=485
Length = 485
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N + +T+VI+ + +G+ +A KL +E+T + Y INGL R EAK+ML
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGN 144
+V C + + TLI C + +L + +R LV + + NT++QG
Sbjct: 303 DLMVTKGCLP--DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT-YNTIIQGY 359
Query: 145 Y---KPDGA 150
+ +PD A
Sbjct: 360 FQAGRPDAA 368
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 17 LFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKA 76
L +G L + V Y ++IN +C + + KL E+ G V + + Y I G +
Sbjct: 304 LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG 363
Query: 77 RTREAKEMLLS------------LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVE----L 120
R A+E+ L+Y C + W + L EN +E + +
Sbjct: 364 RPDAAQEIFSRMDSRPNIRTYSILLYGLCMN-WRVEKALVLFENMQKSEIELDITTYNIV 422
Query: 121 VKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+ G K V +A + ++ KPD Y +I C R DK+ +Y
Sbjct: 423 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY 474
>AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2056999-2060242 REVERSE
LENGTH=997
Length = 997
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V Y ++++ +C + +A KLLD ++ G ++Y I+GL K + EA+E+
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
+ H T + SL++ +++DL A+ VL+ ML+ +
Sbjct: 698 TEMSEHGFPATLYT--------------YSSLIDRYFKVKRQDL---ASKVLSKMLENSC 740
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNM 171
P+ +Y +I C + D+AY +
Sbjct: 741 APNVVIYTEMIDGLCKVGKTDEAYKL 766
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
E G N V YT++I+AY ++ A++L + + + G + V Y I+G K +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Query: 80 EAKEMLLSLVYHNCRD-PWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLN 138
+A ++ + +D P + F +N ++ L+ GF K V EA +L+
Sbjct: 606 KACQIFERMC--GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD 663
Query: 139 TMLQGNYKPDGAVYNLLIVEHCSLRNVDKA 168
M +P+ VY+ LI C + +D+A
Sbjct: 664 AMSMEGCEPNQIVYDALIDGLCKVGKLDEA 693
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V +S++N YC + A L+D++ G + + + I+GL + EA ++
Sbjct: 81 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 140
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ T V V G KR ++ A ++LN M +
Sbjct: 141 MVQRGCQPNLVTYGVV-----------------VNGLCKRGDIDLAFNLLNKMEAAKIEA 183
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D ++N +I C R+VD A N++
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLF 208
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V S++N +C + +A L+D++ G + V + ++GL + + EA ++
Sbjct: 146 VTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 205
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ + ++ ++ G KR + A ++LN M +G +
Sbjct: 206 MVVKGCQP-----------------DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D +YN +I C +++D A++++
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLF 273
>AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8203873-8206341 REVERSE
LENGTH=822
Length = 822
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 13 GYDSLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGL 72
G + T++G + N + YT+VI+AY G+ +A KL + G V Y ++ L
Sbjct: 372 GVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL 431
Query: 73 DKKARTREAKEMLLSLVYHNC---RDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDL 129
KK+R+ E +ML + + C R W+T++ + C N KG K
Sbjct: 432 GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLAL-----CGN----------KGMDK--F 474
Query: 130 VNEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
VN V M ++PD +N LI + + A MY
Sbjct: 475 VNR---VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMY 514
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 28 VNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLS 87
V +S++N YC + A L+D++ G + + + I+GL + EA ++
Sbjct: 156 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 215
Query: 88 LVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKP 147
+V C+ T V V G KR + A ++LN M +
Sbjct: 216 MVQRGCQPNLVTYGVV-----------------VNGLCKRGDTDLALNLLNKMEAAKIEA 258
Query: 148 DGAVYNLLIVEHCSLRNVDKAYNMY 172
D ++N +I C R+VD A N++
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLF 283
>AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419399-23421288 FORWARD
LENGTH=629
Length = 629
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V + ++I+A+ +G+LV+A+KL +E+ + + Y + ING R EAK+M
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMF 386
Query: 86 LSLVYHNCRDPWSTLIFVTLIEN-CTNNEFMSLVELVKGFQKRDLV-------------- 130
+V +C T + TLI C VEL + +R LV
Sbjct: 387 KFMVSKDCLPNIQT--YNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFF 444
Query: 131 -----NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+ A V M+ D Y++L+ CS +D A ++
Sbjct: 445 QAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIF 491
>AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6328519-6329970 REVERSE
LENGTH=483
Length = 483
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
++G + V YT++I +C G L A KL E+ G Y V I+G K+
Sbjct: 311 DKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRG--- 367
Query: 80 EAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNT 139
E+ L ++N ++ N +S ++KGF +EA +
Sbjct: 368 ---EISLVEAFYN-----------EMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKN 413
Query: 140 MLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
M + P+ YN LI C V+K +Y
Sbjct: 414 MSETGVTPNAITYNALIKGFCKENKVEKGLKLY 446
>AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:1303884-1305692 REVERSE
LENGTH=602
Length = 602
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 20 EEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
E+ G + Y ++IN +C + A ++LD + + + V Y + I L + +
Sbjct: 151 EKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLD 210
Query: 80 EAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNT 139
A ++L L+ NC+ + + + LIE +++G V+EA +++
Sbjct: 211 LALKVLNQLLSDNCQP--TVITYTILIE----------ATMLEGG-----VDEALKLMDE 253
Query: 140 MLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNM 171
ML KPD YN +I C VD+A+ M
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 285
>AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=528
Length = 528
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Query: 17 LFTE---EGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLD 73
LFTE +G N + Y+S+I+ C G A +LL ++ V + I+
Sbjct: 275 LFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334
Query: 74 KKARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEA 133
KK + +A+++ + +I+ + + L+ GF D + EA
Sbjct: 335 KKGKLVKAEKL-----------------YEEMIKRSIDPNIFTYSSLINGFCMLDRLGEA 377
Query: 134 ASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
+L M++ + P+ YN LI C + VDK ++
Sbjct: 378 KQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELF 416
>AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23987202-23988740 REVERSE
LENGTH=512
Length = 512
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 17 LFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKA 76
L + G N V Y ++I+ C +GEL A +LL+E+ G + V Y + GL
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225
Query: 77 RTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASV 136
R +A ML RD +++ N + ++ L+ F K+ ++EA +
Sbjct: 226 RWSDAARML--------RD---------MMKRSINPDVVTFTALIDVFVKQGNLDEAQEL 268
Query: 137 LNTMLQGNYKPDGAVYNLLI---VEHCSLRNVDKAYNM 171
M+Q + P+ YN +I H L + K +++
Sbjct: 269 YKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306
>AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18097048-18099027 FORWARD
LENGTH=659
Length = 659
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 30/177 (16%)
Query: 18 FTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVI--YGVFINGLDKK 75
+ +G + V+YT+VI++ C G LVK + L E EPV+ Y INGL K+
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVG-LVKEGRELAERF------EPVVSVYNALINGLCKE 259
Query: 76 ARTREAKEMLLSLVYHNCRD---PWSTLI--------------FVT--LIENCTNNEFMS 116
+ A E++ +V +STLI F+T L C N + +
Sbjct: 260 HDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIY-T 318
Query: 117 LVELVKGFQKRDLVNEAASVLNTMLQG-NYKPDGAVYNLLIVEHCSLRNVDKAYNMY 172
L LVKG R +A + N M++G +P+ YN L+ CS N+ KA +++
Sbjct: 319 LSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVF 375
>AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4294883-4296748 REVERSE
LENGTH=621
Length = 621
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 25 LNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEM 84
L+ V Y+ +I+ C DG L A L +E+ G + +IY I G R + ++
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 85 LLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGN 144
L RD +I+ + ++ L+ F K + EA + M+Q
Sbjct: 305 L--------RD---------MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 145 YKPDGAVYNLLIVEHCSLRNVDKAYNM 171
PD Y LI C +DKA +M
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHM 374
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 16 SLFTEEGGLLNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKK 75
S E+G + V Y ++I+AY + G + +A +L++ + G Y INGL K
Sbjct: 259 SQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKH 318
Query: 76 ARTREAKEMLLSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLV----- 130
+ AKE+ ++ P ST L+E C + + ++ + RD+V
Sbjct: 319 GKYERAKEVFAEMLRSGL-SPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377
Query: 131 --------------NEAASVLNTMLQGNYKPDGAVYNLLIVEHCSLRNVDKAYNM 171
++A N++ + PD +Y +LI +C + A N+
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNL 432
>AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:20370293-20372848 FORWARD
LENGTH=851
Length = 851
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 30 YTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEMLLSLV 89
YT++I+ DG L+ A +L E+ G V + +IY V +NGL KK + + +M +
Sbjct: 727 YTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMK 786
Query: 90 YHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNYKPDG 149
+N + LI+ +I G + ++EA + + ML PDG
Sbjct: 787 KNNVTP--NVLIYNAVI---------------AGHYREGNLDEAFRLHDEMLDKGILPDG 829
Query: 150 AVYNLLI 156
A +++L+
Sbjct: 830 ATFDILV 836
>AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:13844834-13846708 FORWARD
LENGTH=624
Length = 624
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 21 EGGL-LNEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTR 79
EGG+ L+ V+YT++I+ YC +G + +A +L E+++ G + Y V I K+ + +
Sbjct: 462 EGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 80 EAKEMLLSLVYHNCRDP----WSTLIFVTLIENCTNNEFMSLVE---------------L 120
EA+++ ++ N DP +++LI I + + E +
Sbjct: 522 EARKLRANM-EANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVM 580
Query: 121 VKGFQKRDLVNEAASVLNTMLQGNYKPDGAVYNLLI 156
+ G K +EA + + M + Y D VY LI
Sbjct: 581 ISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616
>AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:360918-363050 REVERSE
LENGTH=710
Length = 710
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 26 NEVNYTSVINAYCADGELVKADKLLDELTNFGDVQEPVIYGVFINGLDKKARTREAKEML 85
N V+YT+++ YC E+ +A + ++ + G V Y I GL + R E K++L
Sbjct: 280 NVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL 339
Query: 86 LSLVYHNCRDPWSTLIFVTLIENCTNNEFMSLVELVKGFQKRDLVNEAASVLNTMLQGNY 145
+ D ++T + CT N L+K ++ A V ML
Sbjct: 340 I-----GGNDAFTTFA----PDACTFN------ILIKAHCDAGHLDAAMKVFQEMLNMKL 384
Query: 146 KPDGAVYNLLIVEHCSLRNVDKAYNMY 172
PD A Y++LI C D+A ++
Sbjct: 385 HPDSASYSVLIRTLCMRNEFDRAETLF 411