Miyakogusa Predicted Gene

Lj3g3v3312790.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3312790.2 Non Chatacterized Hit- tr|F4IAF4|F4IAF4_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,40.54,2e-18,coiled-coil,NULL,CUFF.45548.2
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05950.1 | Symbols:  | unknown protein; Has 50 Blast hits to ...    97   7e-21

>AT1G05950.1 | Symbols:  | unknown protein; Has 50 Blast hits to 45
           proteins in 14 species: Archae - 5; Bacteria - 0;
           Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other
           Eukaryotes - 7 (source: NCBI BLink). |
           chr1:1804573-1807471 REVERSE LENGTH=627
          Length = 627

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 7/148 (4%)

Query: 90  ANHCNSDVEKLHILVDSKEI-LSQTALTALIRKRNELALQQRKIEDDIANCEKKIQRVLT 148
           A++ N ++E+L   + SK   LS+TAL  L+ KR++L  QQR IED+IA C+K IQ +  
Sbjct: 445 AHNSNPNLEELQTSLLSKATSLSETALKVLLCKRDKLTRQQRNIEDEIAKCDKCIQNIKG 504

Query: 149 DGEDEFELKIESIIEGCNDVWVRN--QERTCGQQSFPLKRKRLSEAVFIALSPCQELDGV 206
           D    +EL++E+++E CN+ + R   QE          KR +LSE +    S CQ LD +
Sbjct: 505 D----WELQLETVLECCNETYPRRNLQESLDKSACQSNKRLKLSETLPSTKSLCQRLDDI 560

Query: 207 CRENNWLLPTYHLFQSVGGFQANVTVKG 234
           C  NNW+LP Y +  S GG++A V + G
Sbjct: 561 CLMNNWVLPNYRVAPSDGGYEAEVRITG 588