Miyakogusa Predicted Gene

Lj3g3v3302760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3302760.1 Non Chatacterized Hit- tr|J3JYH3|J3JYH3_9CUCU
Uncharacterized protein OS=Dendroctonus ponderosae
PE=,28.94,4e-17,seg,NULL; GAMMA-SECRETASE SUBUNIT
APH-1,Gamma-secretase subunit Aph-1; Aph-1,Gamma-secretase
subunit,CUFF.45544.1
         (249 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31440.1 | Symbols:  | INVOLVED IN: positive regulation of ca...   315   1e-86

>AT2G31440.1 | Symbols:  | INVOLVED IN: positive regulation of
           catalytic activity, protein processing; LOCATED IN:
           integral to membrane; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits
           to 262 proteins in 79 species: Archae - 0; Bacteria - 0;
           Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0;
           Other Eukaryotes - 22 (source: NCBI BLink). |
           chr2:13399309-13400971 REVERSE LENGTH=250
          Length = 250

 Score =  315 bits (808), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 182/249 (73%)

Query: 1   MTVSAGIGYALVALGPSLSIFISVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRGFLPLS 60
           MTV+AGIGYALVALGPSLS+F+SVIS+KPF                       R FLPL 
Sbjct: 1   MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60

Query: 61  TTAWWPYAILILSSIAFQEGLRLFFWKIYKRLEDILDAFADRVSKPHLFLTDKMLIXXXX 120
              WWPYA+L+++S+ FQEGLR  FWK+YKRLED+LD+FADR+S+P LFLTDK+ I    
Sbjct: 61  ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120

Query: 121 XXXXXXXXXXFFCISLLTPAFGPATYFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFN 180
                     FFC+SLLTPAFGPAT++V+RCS+VPFFL+SA+I LAFVTIHTFSMVIAF 
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180

Query: 181 GYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLT 240
           GYA+GNKVDQ  VP++H  AG +T+VN A  GC +G+PLLY V  LTL+HCG+M W+RL 
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLL 240

Query: 241 ENSIRLSNS 249
           E+  + S S
Sbjct: 241 ESRNQSSAS 249