Miyakogusa Predicted Gene

Lj3g3v3261430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3261430.1 Non Chatacterized Hit- tr|I1NEW4|I1NEW4_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,43.75,4e-16,zf-CCHC_4,Zinc knuckle CX2CX4HX4C; DUF4283,Domain of
unknown function DUF4283; ZF_CCHC,Zinc finger, ,CUFF.45535.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding ...    52   7e-08
AT3G31430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    50   2e-07

>AT5G36228.1 | Symbols:  | nucleic acid binding;zinc ion binding |
           chr5:14271691-14272776 FORWARD LENGTH=361
          Length = 361

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 1   MWVRVYDLPLKLKSEAVARRLGDSIGSFVEVDCKLENRLGL-FFRIKVTIDLTKPL-LRG 58
           +WV +  +PL   SE     +  ++G  V +D   E    + F R+KV +D T+PL    
Sbjct: 123 VWVHIRGIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFR 182

Query: 59  TMLFWQGKELKVYFRYERLPNFCFACGRIGHQIKDCDEFEDVEEDHDAVDFPFGP 113
            + F   +   + F YE+L   C  C R+ HQ+  C      EE  +  D    P
Sbjct: 183 RVRFASRERAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVVHQEEMDNEPDVLVSP 237


>AT3G31430.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits
           to 291 proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:12795861-12796871 REVERSE LENGTH=336
          Length = 336

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 2   WVRVYDLPLKLKSEAVARRLGDSIGSFVEVDCKLENRLGL-FFRIKVTIDLTKPL-LRGT 59
           WV++  +P +  +  V   +G ++G  ++ D  +E    + F R+ +  D+T PL  +  
Sbjct: 217 WVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRH 276

Query: 60  MLFWQGKELKVYFRYERLPNFCFACGRIGHQIKDC 94
             F  G    + FRYERL  FC  CG + H    C
Sbjct: 277 FQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGAC 311