Miyakogusa Predicted Gene

Lj3g3v3237910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3237910.1 Non Chatacterized Hit- tr|H0YP37|H0YP37_TAEGU
Uncharacterized protein OS=Taeniopygia guttata
GN=TRAP,53.12,3.6,SNARE-like,Longin-like domain; no description,NULL;
Sybindin,Sybindin-like protein; SYNBINDIN,NULL; ,CUFF.45492.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02280.1 | Symbols:  | SNARE-like superfamily protein | chr5:...   265   6e-72
AT1G51160.2 | Symbols:  | SNARE-like superfamily protein | chr1:...    65   1e-11
AT1G51160.1 | Symbols:  | SNARE-like superfamily protein | chr1:...    65   1e-11

>AT5G02280.1 | Symbols:  | SNARE-like superfamily protein |
           chr5:469377-470129 FORWARD LENGTH=141
          Length = 141

 Score =  265 bits (678), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 133/141 (94%)

Query: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCAGIE 60
           MAAIYSLYIINKSGGLI+YKD G+ GRMDTND+LRVASLWHSMHAISQQLSPV+GC+GIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGTQRMESLLKFVYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSL GTKFFVV EPGT  MESLL+++YELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLTQAVQKDRVALLAR 141
           ELFDINLTQAVQ DRVALL R
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141


>AT1G51160.2 | Symbols:  | SNARE-like superfamily protein |
           chr1:18950057-18951560 FORWARD LENGTH=169
          Length = 169

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 7   LYIINKSGGLIYYKDYGSAGRM--DTNDTLRVASLWHSMHAISQQLSPVS---GCAGIEL 61
           +Y+ N++G  + YK++           D   +  L  S+ +++ ++ PV+   G  G+  
Sbjct: 26  MYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVPQ 85

Query: 62  LQADTFDLHCFQSLT----------GTKFFVVSEPGTQRMESLLKFVYELYTDYVLKNPF 111
           L       H F++ T          G K  +V+ P T  +   LK++Y LY +YV+KNP 
Sbjct: 86  LPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPI 145

Query: 112 YEMEMPIRCELFDINLTQAVQ 132
           Y    PI+ ELF+  L Q V+
Sbjct: 146 YSPGSPIKSELFNTALDQYVR 166


>AT1G51160.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:18950057-18951560 FORWARD LENGTH=169
          Length = 169

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 7   LYIINKSGGLIYYKDYGSAGRM--DTNDTLRVASLWHSMHAISQQLSPVS---GCAGIEL 61
           +Y+ N++G  + YK++           D   +  L  S+ +++ ++ PV+   G  G+  
Sbjct: 26  MYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVPQ 85

Query: 62  LQADTFDLHCFQSLT----------GTKFFVVSEPGTQRMESLLKFVYELYTDYVLKNPF 111
           L       H F++ T          G K  +V+ P T  +   LK++Y LY +YV+KNP 
Sbjct: 86  LPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKNPI 145

Query: 112 YEMEMPIRCELFDINLTQAVQ 132
           Y    PI+ ELF+  L Q V+
Sbjct: 146 YSPGSPIKSELFNTALDQYVR 166