Miyakogusa Predicted Gene

Lj3g3v3237870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3237870.1 Non Chatacterized Hit- tr|I1LJW0|I1LJW0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44605 PE,90.23,0,TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE,tRNA-specific
2-thiouridylase; tRNA_Me_,CUFF.45491.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51310.1 | Symbols:  | transferases;tRNA (5-methylaminomethyl...   455   e-128

>AT1G51310.1 | Symbols:  | transferases;tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferases
           | chr1:19019185-19021735 REVERSE LENGTH=497
          Length = 497

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/266 (81%), Positives = 234/266 (87%), Gaps = 4/266 (1%)

Query: 1   MGFDYVASGHYAKVIHPLEDQMDELSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCI 60
           M +DYV SGHYAKV+HP  DQ D  SVLELSQDMVKDQTYFLSHLSQ+QLKRLLFPLGC+
Sbjct: 197 MEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCV 256

Query: 61  PKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKH 120
            KDEVR+LAT+FDLPNKDRKDSQGICFLGKI+FS+FV RHIGE EGIILEAE+GDFLG H
Sbjct: 257 KKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESGDFLGNH 316

Query: 121 RGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRIFRVGSLKWFSGL 180
           RGFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNY+S DKRRRIFRVGSL+W SG 
Sbjct: 317 RGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNSGK 376

Query: 181 PPSPTSQLKCKVRHGPGFYNCSLQMEVASDNQVDAAVVHISEDDQGLAAGQFAAFYEGRT 240
           P     +L+CKVRHGPGFY+CS +ME       D AVVH+ EDDQGLAAGQFAAFYEG T
Sbjct: 377 PSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAGQFAAFYEGTT 432

Query: 241 CIGSGVILESWDDQSFPVCAKALEIA 266
           CIGSGVILESWDDQ FPVCAKAL++A
Sbjct: 433 CIGSGVILESWDDQCFPVCAKALQLA 458