Miyakogusa Predicted Gene

Lj3g3v3237860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3237860.1 Non Chatacterized Hit- tr|I3SNZ2|I3SNZ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.28,0,S4
RNA-binding domain,RNA-binding S4 domain; U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN PROTEIN IMP3,NULL;,CUFF.45490.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15750.1 | Symbols:  | Alpha-L RNA-binding motif/Ribosomal pr...   241   1e-64
AT5G39850.1 | Symbols:  | Ribosomal protein S4 | chr5:15950053-1...    52   1e-07
AT5G15200.1 | Symbols:  | Ribosomal protein S4 | chr5:4935124-49...    50   6e-07

>AT5G15750.1 | Symbols:  | Alpha-L RNA-binding motif/Ribosomal
           protein S4 family protein | chr5:5141449-5142701 FORWARD
           LENGTH=182
          Length = 182

 Score =  241 bits (615), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/137 (82%), Positives = 124/137 (90%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YS LC MVQKL NI+KQMDP DP R+ MTD LLEKLYNMGVIPTR+S+T  E L+VSSF
Sbjct: 45  KYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSF 104

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLV LKFAEH KEAVTYIEQGHVRVGPET+TDPAFLVTRNMEDF+TWVDSSKI
Sbjct: 105 CRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKI 164

Query: 123 KRKVLKYNDKLDDYDIM 139
           KRKVL+YND LDDYD++
Sbjct: 165 KRKVLEYNDTLDDYDML 181


>AT5G39850.1 | Symbols:  | Ribosomal protein S4 |
           chr5:15950053-15951171 FORWARD LENGTH=197
          Length = 197

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL ++   G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQLVNIPSFMV 150


>AT5G15200.1 | Symbols:  | Ribosomal protein S4 |
           chr5:4935124-4936334 REVERSE LENGTH=198
          Length = 198

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVIPTRQS-ITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K P R+   + LL ++   G++   Q+ +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSS 120
           +  +   I Q H+RVG + V  P+F+V  + +  + +  +S
Sbjct: 124 IHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTS 164