Miyakogusa Predicted Gene

Lj3g3v3236570.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3236570.1 Non Chatacterized Hit- tr|G1M2H4|G1M2H4_AILME
Uncharacterized protein (Fragment) OS=Ailuropoda
melan,51.65,7e-19,Skp1_POZ,SKP1 component, POZ; POZ domain,BTB/POZ
fold; Found in Skp1 protein family,SKP1 component; ,CUFF.45472.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59140.1 | Symbols:  | BTB/POZ domain-containing protein | ch...   160   2e-40

>AT5G59140.1 | Symbols:  | BTB/POZ domain-containing protein |
          chr5:23874696-23875631 REVERSE LENGTH=96
          Length = 96

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 84/94 (89%)

Query: 5  DTVKLISAEGFEFIVDKEAAMVSQTIHNMLTSPGSFSERERGQVTFPEISTAILEKICQY 64
          +TVKLIS EGFEF++D+EAAMVSQTI +MLTSPG FSE + G VTFP+IST ILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWHLQFANGKETEFPIEPELTLELMMAANYLHT 98
          FYW LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96