Miyakogusa Predicted Gene

Lj3g3v3235430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3235430.1 tr|B9HRS5|B9HRS5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_557298 PE=4
SV=1,30.38,2e-18,NAD_binding_10,NULL; seg,NULL; OS05G0291700
PROTEIN,NULL; NITROGEN METABOLIC REGULATION PROTEIN NMR-,CUFF.45503.1
         (520 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46780.1 | Symbols: PTAC16 | plastid transcriptionally active...   497   e-140
AT3G18890.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...    81   2e-15

>AT3G46780.1 | Symbols: PTAC16 | plastid transcriptionally active 16
           | chr3:17228766-17231021 FORWARD LENGTH=510
          Length = 510

 Score =  497 bits (1279), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/497 (55%), Positives = 337/497 (67%), Gaps = 21/497 (4%)

Query: 30  IFAKKSGSFPSFGLGGTKPRDDXXXXXXXXXXXXXXXPFRLNFGKIPDVTSLIPVVNNNS 89
           ++AK++    +F LG TK  DD               PF+ +FGK+PD+ SLIPVV N S
Sbjct: 29  VWAKQT----AFQLGKTKGDDDSEGKQKGKN------PFQFDFGKLPDMKSLIPVVTNPS 78

Query: 90  PGFSLGNARRKDPSTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGSAQELARLAAEY 149
            G   GN R+KDP T+FVAGATGQAG+RIAQTLL+ GFSVRAGVP+LG+AQ+LAR+AA Y
Sbjct: 79  TGLVFGNNRKKDPGTIFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATY 138

Query: 150 KIISKEEAKRLNAVQSSFDDTESIAKAIGNASKVVVTIGATENGPTAEVSISDXXXXXXX 209
           KI+S +E KRLNAVQS F D ESIAKAIGNA+KVVVT+GATENGP A+VS SD       
Sbjct: 139 KILSNDEVKRLNAVQSPFQDAESIAKAIGNATKVVVTVGATENGPDAQVSTSDALLVVQA 198

Query: 210 XXXXXXXXXXXIYDDSSAGTSTYNVLDGITSFFNNIFSRSQPLTVQEFLQKVIETDVKYT 269
                      +YD + +G STYNVLDGITSFF N+F++SQPLT+ + ++KV +TDV YT
Sbjct: 199 AELAGVSHVAIVYDGTISG-STYNVLDGITSFFGNLFAKSQPLTISDLIEKVAQTDVAYT 257

Query: 270 FIKTRLTDDYTPESSYNVVV------VGEESTSANDYKVAKSKIASLVADVFSNTEVAEN 323
            IKT LT+D++PE +YNVVV       G  S+S+  YKV K KIASLVAD+F+NT VAEN
Sbjct: 258 LIKTSLTEDFSPEKAYNVVVSAEGSNSGSGSSSSEAYKVPKLKIASLVADIFANTAVAEN 317

Query: 324 KVVQVYSDPEAPLKRVDELFSTIPVDGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 383
           KVV+V +DP AP + VDELFS IP DGRR                               
Sbjct: 318 KVVEVSTDPSAPSRPVDELFSVIPEDGRRKVYADAIARERAEEEAKVAADKAREAAEAAK 377

Query: 384 XXXXXXXXXSQQETQASSLAKEAQEKAVAAGTSVEDLLSKAKDFGAGISWQKISSQIATS 443
                    S++E +A+SLA++AQ+KA A G +V+ L +KAKD  +G+SW K+ SQ AT+
Sbjct: 378 EFEKQMQKLSEKEAEAASLAEDAQQKADAVGVTVDGLFNKAKDISSGLSWNKLGSQFATA 437

Query: 444 VQKPDEDEKPKVQVATVRGQAKARSLTPNKAVVKQTSPRSVATKPKEENRKQAETAKEVR 503
           +Q  +  E PKVQVATVRGQAKAR+L P KAVVKQ      A+KPKEE  K+ E  KEVR
Sbjct: 438 IQ--NASETPKVQVATVRGQAKARNLPPKKAVVKQRPSSPFASKPKEERPKKPE--KEVR 493

Query: 504 KVFGGLFKQETIYIDDD 520
           KVFGGLFKQETIYIDDD
Sbjct: 494 KVFGGLFKQETIYIDDD 510


>AT3G18890.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr3:6511169-6514729 FORWARD LENGTH=641
          Length = 641

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 27/266 (10%)

Query: 96  NARRKDPSTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGSAQELARLAAEYKIISKE 155
           N   K+   VFVAGATG+ G R  + LL+ GF VRAGV     A  L +   E K+ + +
Sbjct: 75  NLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTD 134

Query: 156 EA----KRLNAVQSSFDDTESIAKAIGNASKVVVTIGATENGPTAEVS-IS-----DXXX 205
           E     ++L  V+   +  +SI  A+GNAS ++  IGA+E     E+S I+     D   
Sbjct: 135 EGTQPVEKLEIVECDLEKKDSIQPALGNASVIICCIGASEK----EISDITGPYRIDYLA 190

Query: 206 XXXXXXXXXXXXXXXIYDDSSAGTSTYNVLDGITSFFNNIFSRSQPLTVQEFLQKVIETD 265
                              +S GT+ +     I + F  +         ++  + +IE+ 
Sbjct: 191 TKNLVDAATSAKVNNFILVTSLGTNKFGFPAAILNLFWGVLCWK-----RKAEEALIESG 245

Query: 266 VKYTFIKT----RLTDDYTPESSYNVVVVGEESTSANDYKVAKSKIASLVADVFSNTEVA 321
           + Y  ++     R TD Y  + ++N+ +  +++      +V+  ++A L+A +  N +++
Sbjct: 246 LNYAIVRPGGMERPTDAY--KETHNLTLALDDTLFGG--QVSNLQVAELLACMAKNPQLS 301

Query: 322 ENKVVQVYSDPEAPLKRVDELFSTIP 347
            +K+V+V ++  APL  +++L   IP
Sbjct: 302 FSKIVEVVAETTAPLTPIEKLLEKIP 327