Miyakogusa Predicted Gene

Lj3g3v3235420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3235420.1 tr|Q3LRE2|Q3LRE2_SOYBN SP-2 OS=Glycine max PE=4
SV=1,81.4,0.00000000001,Transcription factor IIA (TFIIA), beta-barrel
domain,Transcription factor IIA, beta-barrel; Transcri,CUFF.45465.1
         (387 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07480.2 | Symbols:  | Transcription factor IIA, alpha/beta s...   353   1e-97
AT1G07480.1 | Symbols:  | Transcription factor IIA, alpha/beta s...   353   1e-97
AT1G07470.1 | Symbols:  | Transcription factor IIA, alpha/beta s...   347   8e-96
AT5G59230.1 | Symbols:  | transcription factor-related | chr5:23...    69   7e-12

>AT1G07480.2 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2296706-2299215 REVERSE LENGTH=375
          Length = 375

 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 216/392 (55%), Positives = 252/392 (64%), Gaps = 25/392 (6%)

Query: 2   AASTTSQVYVQVIDDVVNKVRDEFVNNAGPGDEVLKELQSIWESKMIQAGVFLGPIERSG 61
             +TTS VY+ VI+DVVNKVR+EF+NN GPG+ VL ELQ IWE+KM+QAGV  GPIERS 
Sbjct: 3   TTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSS 62

Query: 62  TVKPVQGGPITPVHDLNV--XXXXXXXXXXAEMLFXXXXXXXXXXXXXXGTVD-SSMYNI 118
             KP  GGP+T  HDLNV            AEMLF              GT D SSMYNI
Sbjct: 63  AQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNI 120

Query: 119 PTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMNPRPSLDVNVAYVEGRDEADRGNP 178
           PTG SDYP+ G ++G N+++K  RP  YM PPSPW NPR  LDVNVAYV+GRDE +RGN 
Sbjct: 121 PTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGNS 177

Query: 179 NQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDAR-SRNFEIELYGGGISIGAG 237
           NQ  TQD F  SSGKRKRD+ +  Y  GG IPQQDGAGDA    NFE + +    SIG  
Sbjct: 178 NQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAF-RITSIG-- 234

Query: 238 HPTSKEKMPAHLERPASRIPQHDGPI--PYDDDVLSTPNIYNYGGTFTEDYNIANTPAPP 295
                 K+P      +S+IPQ DGP+  PY D++LSTPNIY+Y G  +E++N A TPAP 
Sbjct: 235 ----DRKVPRDFFSSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-SEEFNEARTPAPN 288

Query: 296 EVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTR 355
           E+  STP  V QN++                              NTQHLVLAQFDKVTR
Sbjct: 289 EIQTSTPVAV-QNDI----IEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTR 343

Query: 356 TKSRWKCTLKDGIMHINNKDILFNKANGEFDF 387
           TKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 344 TKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375


>AT1G07480.1 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2296706-2299215 REVERSE LENGTH=375
          Length = 375

 Score =  353 bits (906), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 216/392 (55%), Positives = 252/392 (64%), Gaps = 25/392 (6%)

Query: 2   AASTTSQVYVQVIDDVVNKVRDEFVNNAGPGDEVLKELQSIWESKMIQAGVFLGPIERSG 61
             +TTS VY+ VI+DVVNKVR+EF+NN GPG+ VL ELQ IWE+KM+QAGV  GPIERS 
Sbjct: 3   TTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSS 62

Query: 62  TVKPVQGGPITPVHDLNV--XXXXXXXXXXAEMLFXXXXXXXXXXXXXXGTVD-SSMYNI 118
             KP  GGP+T  HDLNV            AEMLF              GT D SSMYNI
Sbjct: 63  AQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNI 120

Query: 119 PTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMNPRPSLDVNVAYVEGRDEADRGNP 178
           PTG SDYP+ G ++G N+++K  RP  YM PPSPW NPR  LDVNVAYV+GRDE +RGN 
Sbjct: 121 PTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGNS 177

Query: 179 NQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDAR-SRNFEIELYGGGISIGAG 237
           NQ  TQD F  SSGKRKRD+ +  Y  GG IPQQDGAGDA    NFE + +    SIG  
Sbjct: 178 NQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECDAF-RITSIG-- 234

Query: 238 HPTSKEKMPAHLERPASRIPQHDGPI--PYDDDVLSTPNIYNYGGTFTEDYNIANTPAPP 295
                 K+P      +S+IPQ DGP+  PY D++LSTPNIY+Y G  +E++N A TPAP 
Sbjct: 235 ----DRKVPRDFFSSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-SEEFNEARTPAPN 288

Query: 296 EVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTR 355
           E+  STP  V QN++                              NTQHLVLAQFDKVTR
Sbjct: 289 EIQTSTPVAV-QNDI----IEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTR 343

Query: 356 TKSRWKCTLKDGIMHINNKDILFNKANGEFDF 387
           TKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 344 TKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375


>AT1G07470.1 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2291723-2294350 FORWARD LENGTH=375
          Length = 375

 Score =  347 bits (890), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 212/392 (54%), Positives = 247/392 (63%), Gaps = 25/392 (6%)

Query: 2   AASTTSQVYVQVIDDVVNKVRDEFVNNAGPGDEVLKELQSIWESKMIQAGVFLGPIERSG 61
             +TTS VY+ VI+DVVNKVR+EF+NN GPG+ VL ELQ IWE+KM+QAGV  GPIERS 
Sbjct: 3   TTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSS 62

Query: 62  TVKPVQGGPITPVHDLNV--XXXXXXXXXXAEMLFXXXXXXXXXXXXXXGTVD-SSMYNI 118
             KP  GGP+T  HDLNV            AEMLF              GT D SSMYNI
Sbjct: 63  AQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNI 120

Query: 119 PTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMNPRPSLDVNVAYVEGRDEADRGNP 178
           PTG SDYP+ G ++G N+++K  RP  YM PPSPW NPR  LDVNVAYV+GRDE +RGN 
Sbjct: 121 PTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGNS 177

Query: 179 NQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDAR-SRNFEIELYGGGISIGAG 237
           NQ  TQD F  SSGKRKRD+ ++ Y  GG IPQQDGA DA    NFE       + I   
Sbjct: 178 NQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEANFEC----AALRITY- 232

Query: 238 HPTSKEKMPAHLERPASRIPQHDGPI--PYDDDVLSTPNIYNYGGTFTEDYNIANTPAPP 295
                 K+P  L   +S+IPQ DGP+  PY D++LSTPNIY+Y G   E++N A TPAP 
Sbjct: 233 --VGDRKIPRDLIGSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-NEEFNEARTPAPN 288

Query: 296 EVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTR 355
           E+  STP  V  + +                              NTQHLVLAQFDKVTR
Sbjct: 289 EIQTSTPVAVPNDII-----EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTR 343

Query: 356 TKSRWKCTLKDGIMHINNKDILFNKANGEFDF 387
           TKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 344 TKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375


>AT5G59230.1 | Symbols:  | transcription factor-related |
           chr5:23901555-23902379 FORWARD LENGTH=186
          Length = 186

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query: 341 NTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKANGEFDF 387
           N QHLV+ QFDKV R+K++W+C    G+M IN K++LF++A G+F+F
Sbjct: 140 NIQHLVMCQFDKVKRSKNKWECKFNAGVMQINGKNVLFSQATGDFNF 186



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 1  MAASTTSQVYVQVIDDVVNKVRDEFVNNAGPGDEVLKELQSIWESKMIQAGVFLGPIERS 60
          ++ S TS  Y  VIDDV+NK R + V N    + VL ++QS+W++KMIQAG   G IE S
Sbjct: 3  LSTSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETS 62

Query: 61 GTVKPVQGGPITPV 74
                   P TPV
Sbjct: 63 SA-----SIPTTPV 71