Miyakogusa Predicted Gene

Lj3g3v3212140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3212140.1 Non Chatacterized Hit- tr|I1LK10|I1LK10_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23036
PE,42.63,5e-19,seg,NULL,CUFF.45442.1
         (249 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29060.1 | Symbols:  | GRAS family transcription factor | chr...    48   5e-06

>AT2G29060.1 | Symbols:  | GRAS family transcription factor |
           chr2:12481991-12484075 FORWARD LENGTH=694
          Length = 694

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 34/198 (17%)

Query: 80  DSDYFETT-KFISQILMDEYGEESPIF--DPLSLQLTEKSFHNALFDNQYPLN------- 129
           D+D+ ++  K+ISQ+LM+E  E+ P    D LSLQ  EKS + AL   +YP++       
Sbjct: 53  DADFSDSVLKYISQVLMEEDMEDKPCMFHDALSLQAAEKSLYEAL-GEKYPVDDSDQPLT 111

Query: 130 --------VQSPNGETTXXXXXXXXXXXXXXXXXXXCELNPPSVNTPVAVIGDHAFQ--- 178
                   V SP G +                     E N PS      +  +  FQ   
Sbjct: 112 TTTSLAQLVSSPGGSSYASSTTTTSSDSQWSFDC--LENNRPSSWLQTPIPSNFIFQSTS 169

Query: 179 -LNSHGLLDLDSPVSKPLAALDIFSGADSESQFRRGLEEATKFLPSPE--------PRIV 229
              S G     S  S  L + ++F+  D   QF++G+EEA+KFLP           P  +
Sbjct: 170 TRASSGNAVFGSSFSGDLVS-NMFNDTDLALQFKKGMEEASKFLPKSSQLVIDNSVPNRL 228

Query: 230 TGVESCGESSSNMAEENS 247
           TG +S      ++ EE S
Sbjct: 229 TGKKSHWREEEHLTEERS 246