Miyakogusa Predicted Gene
- Lj3g3v3201070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3201070.1 Non Chatacterized Hit- tr|C6TJX7|C6TJX7_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,28.72,0.0000000003,seg,NULL,CUFF.45435.1
(284 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 309 1e-84
AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 304 4e-83
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71777... 59 4e-09
AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 59 6e-09
AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 59 6e-09
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 59 6e-09
AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 58 6e-09
AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 58 6e-09
AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71776... 58 8e-09
>AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:23957756-23959518 FORWARD
LENGTH=299
Length = 299
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/244 (61%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Query: 41 RPQGPSCIFVGPLETANKETLEALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVV 100
R +GPSCIFVGP+++A KETLEALY Q +DAYY+G+PLIVDDMFDRVELKLRWYGSKSVV
Sbjct: 54 REEGPSCIFVGPIDSARKETLEALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVV 113
Query: 101 KYPRCSIRRQSAYADAEEDISMVFALASTWAVFLAFGSLACLGPLSYTVGTAY-QNAFDX 159
KYPRCS+ RQS YADAE+D S V LA+ W + FGS AC+ P Y VG Y + FD
Sbjct: 114 KYPRCSLLRQSTYADAEDDASQVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDS 173
Query: 160 XXXXXXXXXXXXXXI-MLNNIVFIVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNC 218
+ N I+ VLG GYP+AS++V+V++GLWRNDL AL+G CPNC
Sbjct: 174 GLVYSSQLSSSVPILSKFNGILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNC 233
Query: 219 GEEVFAFVRMDRNIDSPHRADCHVCGCLLEFQTNVENSVSRFGRRWVYGRIFLVSLRGRA 278
GEEVFAFVR D++ S H+ADCHVC C LEF+T VE S SR GR+WVYGRI+LVS R
Sbjct: 234 GEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEKSASRLGRKWVYGRIYLVSRPRRD 293
Query: 279 RRQR 282
RR +
Sbjct: 294 RRSK 297
>AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23957756-23959518 FORWARD LENGTH=301
Length = 301
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/246 (60%), Positives = 178/246 (72%), Gaps = 4/246 (1%)
Query: 41 RPQGPSCIFVGPLETANKETLEALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVV 100
R +GPSCIFVGP+++A KETLEALY Q +DAYY+G+PLIVDDMFDRVELKLRWYGSKSVV
Sbjct: 54 REEGPSCIFVGPIDSARKETLEALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVV 113
Query: 101 KYPRCSIRRQSAYADAEEDISMVFALASTWAVFLAFGSLACLGPLSYTVGTAY-QNAFDX 159
KYPRCS+ RQS YADAE+D S V LA+ W + FGS AC+ P Y VG Y + FD
Sbjct: 114 KYPRCSLLRQSTYADAEDDASQVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDS 173
Query: 160 XXXXXXXXXXXXXXI-MLNNIVFIVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNC 218
+ N I+ VLG GYP+AS++V+V++GLWRNDL AL+G CPNC
Sbjct: 174 GLVYSSQLSSSVPILSKFNGILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNC 233
Query: 219 GEEVFAFVRMDRNIDSPHRADCHVCGCLLEFQTNVE--NSVSRFGRRWVYGRIFLVSLRG 276
GEEVFAFVR D++ S H+ADCHVC C LEF+T VE S SR GR+WVYGRI+LVS
Sbjct: 234 GEEVFAFVRSDQSNRSAHKADCHVCECTLEFRTKVEVDKSASRLGRKWVYGRIYLVSRPR 293
Query: 277 RARRQR 282
R RR +
Sbjct: 294 RDRRSK 299
>AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177709
REVERSE LENGTH=313
Length = 313
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D++++KL+ GS+ V + PRCS+R + Y+D D
Sbjct: 129 EQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYF 188
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+F L + A +A G L + T ++ + + L
Sbjct: 189 KMF-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------LLELPEPFS 227
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEE---VFAFVRMDRNIDSPHRA 238
+ + P + L D + L+G CPNCG E F + N + +
Sbjct: 228 FIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNV 287
Query: 239 DCHVCG 244
C CG
Sbjct: 288 KCSGCG 293
>AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 140 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 199
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+ L + A +A G L + T ++ + + L
Sbjct: 200 KML-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------IMELPEPYS 238
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRAD-- 239
+ + P+ I L D + L+G CPNCG E +F +I S + +
Sbjct: 239 FIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTV 298
Query: 240 -CHVCGCLLEFQT 251
C CG + + +
Sbjct: 299 KCTNCGTAMVYDS 311
>AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 140 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 199
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+ L + A +A G L + T ++ + + L
Sbjct: 200 KML-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------IMELPEPYS 238
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRAD-- 239
+ + P+ I L D + L+G CPNCG E +F +I S + +
Sbjct: 239 FIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTV 298
Query: 240 -CHVCGCLLEFQT 251
C CG + + +
Sbjct: 299 KCTNCGTAMVYDS 311
>AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 140 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 199
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+ L + A +A G L + T ++ + + L
Sbjct: 200 KML-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------IMELPEPYS 238
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRAD-- 239
+ + P+ I L D + L+G CPNCG E +F +I S + +
Sbjct: 239 FIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTV 298
Query: 240 -CHVCGCLLEFQT 251
C CG + + +
Sbjct: 299 KCTNCGTAMVYDS 311
>AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=322
Length = 322
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 138 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 197
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+ L + A +A G L + T ++ + + L
Sbjct: 198 KML-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------IMELPEPYS 236
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRAD-- 239
+ + P+ I L D + L+G CPNCG E +F +I S + +
Sbjct: 237 FIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTV 296
Query: 240 -CHVCGCLLEFQT 251
C CG + + +
Sbjct: 297 KCTNCGTAMVYDS 309
>AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=321
Length = 321
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 137 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 196
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+ L + A +A G L + T ++ + + L
Sbjct: 197 KML-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------IMELPEPYS 235
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRAD-- 239
+ + P+ I L D + L+G CPNCG E +F +I S + +
Sbjct: 236 FIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTV 295
Query: 240 -CHVCGCLLEFQT 251
C CG + + +
Sbjct: 296 KCTNCGTAMVYDS 308
>AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177612
REVERSE LENGTH=296
Length = 296
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 62 EALYCQTRDAYYSGEPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDIS 121
E + + AY SG P++ D+ +D++++KL+ GS+ V + PRCS+R + Y+D D
Sbjct: 112 EQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYF 171
Query: 122 MVFALASTWAVFLAFGSLACLGPLSYTVGTAYQNAFDXXXXXXXXXXXXXXXIMLNNIVF 181
+F L + A +A G L + T ++ + + L
Sbjct: 172 KMF-LLNVPATVVALGLFFFLDDI-----TGFEITY---------------LLELPEPFS 210
Query: 182 IVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEE---VFAFVRMDRNIDSPHRA 238
+ + P + L D + L+G CPNCG E F + N + +
Sbjct: 211 FIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNV 270
Query: 239 DCHVCG 244
C CG
Sbjct: 271 KCSGCG 276