Miyakogusa Predicted Gene

Lj3g3v3188600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3188600.1 Non Chatacterized Hit- tr|C5Y8K0|C5Y8K0_SORBI
Putative uncharacterized protein Sb05g027610
OS=Sorghu,49.08,1e-18,seg,NULL,CUFF.45405.1
         (297 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   107   9e-24
AT2G39560.1 | Symbols:  | Putative membrane lipoprotein | chr2:1...    52   6e-07

>AT5G59350.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:23941132-23941995 FORWARD LENGTH=287
          Length = 287

 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 2   SLSGLVIALSVAFGCFXXXXXXXXXXXXWWKKRRX--------XXXXXXXDHSNDAKGLL 53
           ++SGL I LS+ FG                KK +                  +  AK L+
Sbjct: 3   TISGLGIGLSLMFGFLLLALVGEVYYLLRCKKHKKRVISQESEEEKEEEQQQNGYAKELI 62

Query: 54  NGVCWKAPST--TNSVTVRSSEPENKSHEPDLELGKDVVGLKNFGEEGVECELMRLHNLA 111
              C+K P +   N+         N+   PDLELG  ++   N G+ G E ELM+LHN  
Sbjct: 63  QLFCFKKPQSLQQNNGGREGEVSMNEDGNPDLELG--LMKHLNGGDLGFEAELMKLHN-- 118

Query: 112 GPPRFLFTIXXXXXXXXXXXXGRSRKGSRTRSLSDIMVATID--SPFLNPVASSPLKCSL 169
              RFLFTI            G   +         +     D  +P   P+AS   K S 
Sbjct: 119 --QRFLFTIMEETKADLESEDGGKSRLGSRSRRRSLSDVPNDCNTPGFTPLASP--KKSS 174

Query: 170 DGLDSFKHQGFNPLFESSMESELNRF--RSNSPPPKFKFLRDAEEKLYRRLIEEAQRK 225
             L+S+ H GFNPLFES  E E N+F   S+SPPPKFKF+RDAEEKL +RLIEEA+R+
Sbjct: 175 SPLESYPHHGFNPLFESDGELEFNKFFRSSSSPPPKFKFMRDAEEKLRKRLIEEAKRR 232


>AT2G39560.1 | Symbols:  | Putative membrane lipoprotein |
           chr2:16505124-16505825 REVERSE LENGTH=233
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 102/253 (40%), Gaps = 59/253 (23%)

Query: 2   SLSGLVIALSVAFGCFXXXXXXXXXXXXWWKKRRXXXXXXXXDHSND-----AKGLLNGV 56
           SLS + +ALS+ FGC             W KKR         D  ND      + LL   
Sbjct: 3   SLSSVGLALSIVFGCLLLALLAELYYLLWCKKR---STTRRPDFRNDYSTPGTRELLFIF 59

Query: 57  CWKAPSTTNSVTVRSS-----EPENKSHEPDLELGKDVVGLKNFGEEGVECELMRLHNLA 111
           C  + +  +S +  SS     +P +   +  L  G                      N+ 
Sbjct: 60  CCSSSTNPSSSSPSSSSFSNPKPIDTQQQCPLNNG--------------------FENVG 99

Query: 112 GP---PRFLFTIXXXXXXXXXXXXGRSRKGSRTRSLSDIMV----ATIDSPFLNPVASS- 163
           GP   PRFLFTI              S KG   +SL+D+ +      I  P+L P AS  
Sbjct: 100 GPGLVPRFLFTIMEETVEEMESEDVVSTKG---KSLNDLFLNMESGVITPPYLTPRASPS 156

Query: 164 ----PLKCSLDGLDSFKHQGFNPLFESSMESELNRF-----------RSNSPPPKFKFLR 208
               PL   L    + + +  + LFESS ++E NR             S+SP  +FKFLR
Sbjct: 157 LFTPPLTPLLMESCNGRKEEISSLFESSSDAEFNRLVRSSPLSSSHSPSSSPLSRFKFLR 216

Query: 209 DAEEKLYRRLIEE 221
           DAEEKLY++ + E
Sbjct: 217 DAEEKLYKKKVME 229