Miyakogusa Predicted Gene

Lj3g3v3177310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3177310.1 tr|F2E038|F2E038_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,68.85,1e-17,coiled-coil,NULL,CUFF.45381.1
         (358 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   551   e-157

>AT5G59960.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleus;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:24142352-24145140 REVERSE LENGTH=359
          Length = 359

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/340 (77%), Positives = 296/340 (87%)

Query: 12  AYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDVIVNKEEDAISSAEY 71
           AYL+AL Q I KKL RA+ + +Q RNLLQ+LFAD+ALEVDDRAKDVI++KEED I+S E 
Sbjct: 16  AYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEEDLITSDEA 75

Query: 72  VNDGPLCFYDVLADYFVRVPESGKPILDMIVQLWSQSFASHIFALLFHKWLFEVHLDNPD 131
             DGPLCF+DVLADY+V+V E GK ILD++VQLWSQSFASHIF+LLFHKWLFEV LDN +
Sbjct: 76  DADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELDNQE 135

Query: 132 VLLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLDDVALHHSRLNKIPVQAQRDMYLL 191
           +LLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLL++VAL   RL KIP+QAQR++YLL
Sbjct: 136 ILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQAQRELYLL 195

Query: 192 LSRFILFYNSAGKLGSFFKQCPVFQTAFLVGGPADIFVTELTDQLLKLKVEPVLLHYLSE 251
           LSRFI FYNS  KL SF +  P F  AFL+GGP D  V ELTDQL KLKVEPVLLHYLS+
Sbjct: 196 LSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQ 255

Query: 252 IKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHLIS 311
           +K+LQGMELRMTTSTRLK CLYSFTSPGGPMYPTRAVRHAAWDALD LFPVG+YPRHLIS
Sbjct: 256 MKILQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALDSLFPVGRYPRHLIS 315

Query: 312 LFFRLLYPWYWPSSCWYFAISCLQAIFNSLLRLIFSSWEK 351
           LFFRLLYPWYWPSSCW F +SC++A+  S++RLIFS  EK
Sbjct: 316 LFFRLLYPWYWPSSCWNFVVSCIKAVLYSIVRLIFSRREK 355