Miyakogusa Predicted Gene

Lj3g3v3177300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3177300.1 Non Chatacterized Hit- tr|I1LK48|I1LK48_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34613 PE,70,0,no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA recognition
motif domain; RNA-binding d,CUFF.45379.1
         (244 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   211   4e-55
AT5G59950.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   209   1e-54
AT5G59950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   207   7e-54
AT5G02530.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   194   5e-50
AT5G02530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   194   6e-50
AT5G59950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   193   1e-49
AT5G59950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   161   4e-40
AT1G66260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   117   8e-27
AT1G66260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   117   8e-27
AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149...   111   4e-25
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149...   111   4e-25
AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   6e-08
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |...    53   2e-07
AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zi...    51   8e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1...    50   1e-06
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   4e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   4e-06
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29...    48   5e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29...    48   5e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29...    48   5e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29...    48   6e-06

>AT5G59950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=244
          Length = 244

 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/257 (47%), Positives = 151/257 (58%), Gaps = 26/257 (10%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRI-------------PNRSGNRTAPY 47
           MS GLDM+LDD+I  N+KS       R G GPAR               PNR   R+APY
Sbjct: 1   MSTGLDMSLDDMIAKNRKS-------RGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPY 53

Query: 48  AATAKAPETAWQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELF 107
             +AKAPE+ W HD++ D++          R+   +ETGTKL ISNLDYGV N+DIKELF
Sbjct: 54  Q-SAKAPESTWGHDMFSDRS----EDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELF 108

Query: 108 GEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANIS 167
            EVG+LKR+ V +DRSGRSKG+A VV+SRR DA+AAVK+YN+VQLDGKPMK+EIVG N+ 
Sbjct: 109 AEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

Query: 168 SPSVPPALSGAFGNRIGVPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKVSAE 227
           + + P     A GN  G P                                   EK+SAE
Sbjct: 169 TAAAPSGRP-ANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAE 227

Query: 228 DLDADLEKYHAESMQLN 244
           DLDADL+KYH+  M+ N
Sbjct: 228 DLDADLDKYHSGDMETN 244


>AT5G59950.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=245
          Length = 245

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/258 (47%), Positives = 152/258 (58%), Gaps = 27/258 (10%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRI-------------PNRSGNRTAPY 47
           MS GLDM+LDD+I  N+KS       R G GPAR               PNR   R+APY
Sbjct: 1   MSTGLDMSLDDMIAKNRKS-------RGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPY 53

Query: 48  AATAKAPETAWQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELF 107
             +AKAPE+ W HD++ D++          R+   +ETGTKL ISNLDYGV N+DIKELF
Sbjct: 54  Q-SAKAPESTWGHDMFSDRS----EDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELF 108

Query: 108 GEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANIS 167
            EVG+LKR+ V +DRSGRSKG+A VV+SRR DA+AAVK+YN+VQLDGKPMK+EIVG N+ 
Sbjct: 109 AEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

Query: 168 SPSVPPALSGAFGNRIGVPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXDEKVSA 226
           + + P     A GN  G P S                                  EK+SA
Sbjct: 169 TAAAPSGRP-ANGNSNGAPWSRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISA 227

Query: 227 EDLDADLEKYHAESMQLN 244
           EDLDADL+KYH+  M+ N
Sbjct: 228 EDLDADLDKYHSGDMETN 245


>AT5G59950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=242
          Length = 242

 Score =  207 bits (526), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 149/257 (57%), Gaps = 28/257 (10%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRI-------------PNRSGNRTAPY 47
           MS GLDM+LDD+I  N+KS       R G GPAR               PNR   R+APY
Sbjct: 1   MSTGLDMSLDDMIAKNRKS-------RGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPY 53

Query: 48  AATAKAPETAWQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELF 107
            +   APE+ W HD++ D++          R+   +ETGTKL ISNLDYGV N+DIKELF
Sbjct: 54  QS---APESTWGHDMFSDRSED----HRSGRSSAGIETGTKLYISNLDYGVMNEDIKELF 106

Query: 108 GEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANIS 167
            EVG+LKR+ V +DRSGRSKG+A VV+SRR DA+AAVK+YN+VQLDGKPMK+EIVG N+ 
Sbjct: 107 AEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 166

Query: 168 SPSVPPALSGAFGNRIGVPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKVSAE 227
           + + P     A GN  G P                                   EK+SAE
Sbjct: 167 TAAAPSGRP-ANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAE 225

Query: 228 DLDADLEKYHAESMQLN 244
           DLDADL+KYH+  M+ N
Sbjct: 226 DLDADLDKYHSGDMETN 242


>AT5G02530.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:564332-565776 REVERSE LENGTH=290
          Length = 290

 Score =  194 bits (493), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 130/193 (67%), Gaps = 21/193 (10%)

Query: 1   MSAGLDMTLDDLIKTNKK--------------SGSGNFRGRSGPGPARRIPNRSGNRTAP 46
           MS GLDM+LDD+IK+N+K              +  G     S  GP+RR  NR G RTAP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 47  YA---ATAKAPETAWQHDLYGDQALPPYPVAHDARAP----PSLETGTKLLISNLDYGVS 99
           Y+      +A +  WQ+D++   A       H   A      S+ETGTKL ISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 100 NDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKV 159
           N+DIKELF EVGDLKR+G+ YDRSGRSKG+A VVFSRR DA+AAVKRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 160 EIVGANISSPSVP 172
           EIVG N+S+P++P
Sbjct: 181 EIVGTNLSAPALP 193


>AT5G02530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:564332-565776 REVERSE LENGTH=292
          Length = 292

 Score =  194 bits (492), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 130/193 (67%), Gaps = 21/193 (10%)

Query: 1   MSAGLDMTLDDLIKTNKK--------------SGSGNFRGRSGPGPARRIPNRSGNRTAP 46
           MS GLDM+LDD+IK+N+K              +  G     S  GP+RR  NR G RTAP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 47  YA---ATAKAPETAWQHDLYGDQALPPYPVAHDARAP----PSLETGTKLLISNLDYGVS 99
           Y+      +A +  WQ+D++   A       H   A      S+ETGTKL ISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 100 NDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKV 159
           N+DIKELF EVGDLKR+G+ YDRSGRSKG+A VVFSRR DA+AAVKRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 160 EIVGANISSPSVP 172
           EIVG N+S+P++P
Sbjct: 181 EIVGTNLSAPALP 193


>AT5G59950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141410 FORWARD LENGTH=211
          Length = 211

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 131/199 (65%), Gaps = 26/199 (13%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRI-------------PNRSGNRTAPY 47
           MS GLDM+LDD+I  N+KS       R G GPAR               PNR   R+APY
Sbjct: 1   MSTGLDMSLDDMIAKNRKS-------RGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPY 53

Query: 48  AATAKAPETAWQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELF 107
             +AKAPE+ W HD++ D++          R+   +ETGTKL ISNLDYGV N+DIKELF
Sbjct: 54  Q-SAKAPESTWGHDMFSDRSED----HRSGRSSAGIETGTKLYISNLDYGVMNEDIKELF 108

Query: 108 GEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANIS 167
            EVG+LKR+ V +DRSGRSKG+A VV+SRR DA+AAVK+YN+VQLDGKPMK+EIVG N+ 
Sbjct: 109 AEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

Query: 168 SPSVPPALSGAFGNRIGVP 186
           + + P     A GN  G P
Sbjct: 169 TAAAPSGRP-ANGNSNGAP 186


>AT5G59950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140629-24141504 FORWARD LENGTH=178
          Length = 178

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 78  RAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRR 137
           R+   +ETGTKL ISNLDYGV N+DIKELF EVG+LKR+ V +DRSGRSKG+A VV+SRR
Sbjct: 13  RSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRR 72

Query: 138 ADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSVPPALSGAFGNRIGVPQSXXXXXXXXX 197
            DA+AAVK+YN+VQLDGKPMK+EIVG N+ + + P     A GN  G P           
Sbjct: 73  GDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP-ANGNSNGAPWRGGQGRGGQQ 131

Query: 198 XXXXXXXXXXXXXXXXXXXXXXXDEKVSAEDLDADLEKYHAESMQLN 244
                                   EK+SAEDLDADL+KYH+  M+ N
Sbjct: 132 RGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKYHSGDMETN 178


>AT1G66260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:24695895-24697883 REVERSE LENGTH=295
          Length = 295

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 38/200 (19%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARR------------------------- 35
           MS  L+MTLD+++K +K   S   R   G G +R+                         
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARS-GGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP 59

Query: 36  --IPNRSGNRTAPYAATAKAPETAWQH--DLYGDQALPPYPVAHDARAPPSLETGTKLLI 91
             +  R  +  +      +     WQ+  DLY ++ L    V+        +E GT + I
Sbjct: 60  LAVNTRPSSSFSINKLARRKRSLPWQNQNDLY-EETLRAVGVS-------GVEVGTTVYI 111

Query: 92  SNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQ 151
           +NLD GV+N+DI+EL+ E+G+LKR+ + YD++GR  GSA VV+ RR+DAI A+++YNNV 
Sbjct: 112 TNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVL 171

Query: 152 LDGKPMKVEIVGANISSPSV 171
           LDG+PMK+EI+G N  S  V
Sbjct: 172 LDGRPMKLEILGGNTESAPV 191


>AT1G66260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:24695895-24697883 REVERSE LENGTH=295
          Length = 295

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 38/200 (19%)

Query: 1   MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARR------------------------- 35
           MS  L+MTLD+++K +K   S   R   G G +R+                         
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARS-GGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP 59

Query: 36  --IPNRSGNRTAPYAATAKAPETAWQH--DLYGDQALPPYPVAHDARAPPSLETGTKLLI 91
             +  R  +  +      +     WQ+  DLY ++ L    V+        +E GT + I
Sbjct: 60  LAVNTRPSSSFSINKLARRKRSLPWQNQNDLY-EETLRAVGVS-------GVEVGTTVYI 111

Query: 92  SNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQ 151
           +NLD GV+N+DI+EL+ E+G+LKR+ + YD++GR  GSA VV+ RR+DAI A+++YNNV 
Sbjct: 112 TNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVL 171

Query: 152 LDGKPMKVEIVGANISSPSV 171
           LDG+PMK+EI+G N  S  V
Sbjct: 172 LDGRPMKLEILGGNTESAPV 191


>AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 |
           chr5:14981805-14983978 REVERSE LENGTH=280
          Length = 280

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 8/111 (7%)

Query: 58  WQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHG 117
           WQ  L+ D           A     +E GT+L ++NLD GV+N+DI+ELF E+G+++R+ 
Sbjct: 72  WQSGLFED--------GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYA 123

Query: 118 VDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISS 168
           + YD++GR  G+A VV+ RR+DA  A+K+YNNV LDG+PM++EI+G N SS
Sbjct: 124 IHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 174


>AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 |
           chr5:14981805-14983978 REVERSE LENGTH=288
          Length = 288

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 8/111 (7%)

Query: 58  WQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHG 117
           WQ  L+ D           A     +E GT+L ++NLD GV+N+DI+ELF E+G+++R+ 
Sbjct: 72  WQSGLFED--------GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYA 123

Query: 118 VDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISS 168
           + YD++GR  G+A VV+ RR+DA  A+K+YNNV LDG+PM++EI+G N SS
Sbjct: 124 IHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 174


>AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:15634980-15636331 REVERSE LENGTH=289
          Length = 289

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 79  APP---SLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVF 134
           APP   S     KL + NL + V +  + +LF   G+++   V YD+ +GRS+G   V  
Sbjct: 80  APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139

Query: 135 SRRADAIAAVKRYNNVQLDGKPMKV 159
           S  ++  AA +++N  +LDG+P++V
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRV 164


>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
           chr2:9943209-9946041 FORWARD LENGTH=662
          Length = 662

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%)

Query: 86  GTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVK 145
           G  L + NLD  V+++ ++ELF E G +    V  D SG SKGS  V FS  ++A   + 
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386

Query: 146 RYNNVQLDGKPMKVEI 161
             N   + GKP+ V +
Sbjct: 387 EMNGKMVGGKPLYVAL 402


>AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zinc
           finger domains containing protein | chr3:3232636-3233421
           FORWARD LENGTH=261
          Length = 261

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 87  TKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGR-SKGSAVVVFSRRADAIAAVK 145
           + L +SNLD+ ++N DI  LF   G + R  V  DR  R S+G A V++  R DA  A +
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 146 RYNNVQLDGKPMKVEIVGAN 165
             +   L+G+ + V I   N
Sbjct: 117 SMDAKILNGRKLTVSIAADN 136


>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
           chr2:15361476-15364398 REVERSE LENGTH=609
          Length = 609

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 87  TKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKR 146
           + + + N++  V+ +++++ F + G +    +  D  G+SKG   V FS   +AI AVK 
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363

Query: 147 YNNVQLDGKPMKVEIVGANISSPSVPPALSGAFGNRIGVPQS 188
           ++     GKP+ V I             L   FGNR+   +S
Sbjct: 364 FHGQMFHGKPLYVAIAQ---KKEDRKMQLQVQFGNRVEARKS 402


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 86  GTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVK 145
           G+ L + NLD  V+++ +KE+F E G++    V  +  G S+G   V +S   +A+ A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400

Query: 146 RYNNVQLDGKPMKVEI 161
             N   +  KP+ V +
Sbjct: 401 EMNGKMIGRKPLYVAL 416


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%)

Query: 86  GTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVK 145
           G+ L + NLD  V+++ +KE+F E G++    V  +  G S+G   V +S   +A+ A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400

Query: 146 RYNNVQLDGKPMKVEI 161
             N   +  KP+ V +
Sbjct: 401 EMNGKMIGRKPLYVAL 416


>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 88  KLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVFSRRADAIAAVKR 146
           +L + NL +GV +  ++ LF E G +    V YDR SGRSKG   V  S   +   A+  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 147 YNNVQLDGKPMKV 159
            N   LDG+ ++V
Sbjct: 318 LNGADLDGRQIRV 330


>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 88  KLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVFSRRADAIAAVKR 146
           +L + NL +GV +  ++ LF E G +    V YDR SGRSKG   V  S   +   A+  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 147 YNNVQLDGKPMKV 159
            N   LDG+ ++V
Sbjct: 318 LNGADLDGRQIRV 330


>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 88  KLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVFSRRADAIAAVKR 146
           +L + NL +GV +  ++ LF E G +    V YDR SGRSKG   V  S   +   A+  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 147 YNNVQLDGKPMKV 159
            N   LDG+ ++V
Sbjct: 318 LNGADLDGRQIRV 330


>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=363
          Length = 363

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 88  KLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVFSRRADAIAAVKR 146
           +L + NL +GV +  ++ LF E G +    V YDR SGRSKG   V  S   +   A+  
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338

Query: 147 YNNVQLDGKPMKV 159
            N   LDG+ ++V
Sbjct: 339 LNGADLDGRQIRV 351