Miyakogusa Predicted Gene

Lj3g3v3166240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3166240.1 Non Chatacterized Hit- tr|K4B294|K4B294_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,97.56,5e-16,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; UCH_2_1,Pepti,CUFF.45371.1
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22310.1 | Symbols: ATUBP4, UBP4 | ubiquitin-specific proteas...    86   7e-18
AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific proteas...    85   8e-18
AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 | ch...    84   1e-17

>AT2G22310.1 | Symbols: ATUBP4, UBP4 | ubiquitin-specific protease
          4 | chr2:9476733-9478825 REVERSE LENGTH=365
          Length = 365

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 38/41 (92%)

Query: 1  MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQVL 41
          MGA GSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQ L
Sbjct: 1  MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQAL 41


>AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease
          3 | chr4:18511858-18514139 REVERSE LENGTH=371
          Length = 371

 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 38/41 (92%)

Query: 1  MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQVL 41
          MGA GSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQ L
Sbjct: 1  MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQAL 41


>AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 |
          chr2:9476733-9478825 REVERSE LENGTH=379
          Length = 379

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 50/69 (72%), Gaps = 4/69 (5%)

Query: 1  MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQVLPSHHSSI--SNFIVFLCL- 57
          MGA GSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQ       S+  S F ++ C  
Sbjct: 1  MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQDWVVDLRSVLHSMFALYFCAP 60

Query: 58 FR-YLIVHY 65
          FR  L+ HY
Sbjct: 61 FREQLLEHY 69