Miyakogusa Predicted Gene

Lj3g3v3165170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3165170.1 Non Chatacterized Hit- tr|J3L5N2|J3L5N2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G4,37.69,0.000000008,coiled-coil,NULL; seg,NULL; FAMILY NOT
NAMED,NULL; DUF966,Protein of unknown function DUF966,CUFF.45370.1
         (423 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59790.1 | Symbols:  | Domain of unknown function (DUF966) | ...   318   6e-87
AT3G46110.1 | Symbols:  | Domain of unknown function (DUF966) | ...   241   7e-64
AT3G46110.2 | Symbols:  | Domain of unknown function (DUF966) | ...   228   6e-60
AT2G28150.1 | Symbols:  | Domain of unknown function (DUF966) | ...   167   1e-41
AT5G10150.1 | Symbols:  | Domain of unknown function (DUF966) | ...   134   1e-31
AT1G05577.1 | Symbols:  | Domain of unknown function (DUF966) | ...   104   1e-22

>AT5G59790.1 | Symbols:  | Domain of unknown function (DUF966) |
           chr5:24090950-24092804 FORWARD LENGTH=423
          Length = 423

 Score =  318 bits (814), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 184/403 (45%), Positives = 236/403 (58%), Gaps = 42/403 (10%)

Query: 31  VWTEP--KPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGM 88
           +W+EP  KP   R+V VVYYL RNGQL+HPHF+EV+LSS  GL+LKDVI+RLN LRGKGM
Sbjct: 33  IWSEPRLKPVVNRKVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVINRLNDLRGKGM 92

Query: 89  ATMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILE-----HAGGGAGVAPH 143
           A++YSWS+KRSYKNGFVWHDLSE+DFI+P QGQ+Y+LKGSE+L+     +       +  
Sbjct: 93  ASLYSWSSKRSYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLDSCLISNPRSLLETSSF 152

Query: 144 TSPQTQKSEEES--DFPAAITRRRNQSWGSMDLNEYRVYK-SDSFGDSAGRV-AEAATQT 199
             P++   ++ S  D PA I RRRNQSW S+DL+EY+VYK ++S  +S  R+ A+A+TQT
Sbjct: 153 RDPRSLNPDKNSGDDIPAVINRRRNQSWSSIDLSEYKVYKATESSAESTQRLAADASTQT 212

Query: 200 DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVPHQSTELSREEIXXXXXXXXXEX-- 257
           DD                                  +QSTELSR+EI         E   
Sbjct: 213 DDRRRRRRPAKEEIEEVKSPASYE------------NQSTELSRDEISPPPSDSSPETLE 260

Query: 258 -------------XXXXXXXXXXXXXXXXXXXXSSVLLQLLSCGAVSFKESGAGAGKDQG 304
                                            S+VL+QL+SCG +SFKE G    KDQG
Sbjct: 261 NLIKADGRLILRPSESSTDHRTVESLSSGRMRASAVLMQLISCGTMSFKECGPVLLKDQG 320

Query: 305 FSLVGHYKSRLPRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFSGSLIETQKVETPSLKR 364
            +L G     + RGA ++G + V    E+    RV+LEDKEYFSGSLIET+K   P+LKR
Sbjct: 321 LALNGRSGCTITRGAEDNGEERVDK--ELKSFGRVQLEDKEYFSGSLIETKKELVPALKR 378

Query: 365 SNSYNADSGSRL--QMIEHEGEVVRAKCIPRKSKTLTTKKEEG 405
           S+SYNAD  SR+     + E E VRAKCIPRK K +  +   G
Sbjct: 379 SSSYNADRCSRMGPTTEKDEEEAVRAKCIPRKPKPVAKRNNGG 421


>AT3G46110.1 | Symbols:  | Domain of unknown function (DUF966) |
           chr3:16932244-16933588 FORWARD LENGTH=343
          Length = 343

 Score =  241 bits (615), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/380 (40%), Positives = 201/380 (52%), Gaps = 68/380 (17%)

Query: 36  KPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMYSWS 95
           KP   R V VVYYLSRNG+L+HPHF+EV LSS +GL+LKDVI+RLN LRG GMA +YSWS
Sbjct: 13  KPSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVINRLNDLRGNGMACLYSWS 72

Query: 96  AKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTSPQTQKSEEES 155
           +KR+YKNGFVW+DLS+ DFI+P  GQ+Y+LKGS+IL+                       
Sbjct: 73  SKRTYKNGFVWYDLSDEDFIFPVHGQEYVLKGSQILDLDNNSGNF--------------- 117

Query: 156 DFPAAITRRRNQSWGSMDLNEYRVYKSDSFGDSAGR--VAEAATQTDDXXXXXXXXXXXX 213
              +A+T RRNQSW S+D   Y+VYK+      A R    +A+TQTDD            
Sbjct: 118 ---SAVTHRRNQSWSSVD--HYKVYKASELNAEATRKLSMDASTQTDDRRRRKSPVDEV- 171

Query: 214 XXXXXXXXXXXXXXXXXXXRVPHQSTELSREEIX----------XXXXXXXXEXXXXXXX 263
                                 ++ TELSREEI                   +       
Sbjct: 172 ----------------------NEVTELSREEITSPPQSDSSPETLESLMRADGRLILLQ 209

Query: 264 XXXXXXXXXXXXXXSSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHG 323
                         S+VL+QL+SCGA+SFK+ G          + G+ +S   RG GN+ 
Sbjct: 210 EDQELNRTVEKMRPSAVLMQLISCGAMSFKKCGPTL-------MNGNTRSTAVRGTGNYR 262

Query: 324 GKEVGTLMEIPDLSRVRLEDKEYFSGSLIE--TQKVETPSLKRSNSYNADSGSRLQMI-E 380
            +      E+    RV+LE+KEYFSGSLI+  ++K   P+LKRS+SYN D  SR+ +  E
Sbjct: 263 LERAEK--ELKSFGRVKLEEKEYFSGSLIDESSKKELVPALKRSSSYNIDRSSRMGLTKE 320

Query: 381 HEG-EVVRAKCIPRKSKTLT 399
            EG E+ RA  IPR   ++ 
Sbjct: 321 KEGEELARANFIPRNPNSVV 340


>AT3G46110.2 | Symbols:  | Domain of unknown function (DUF966) |
           chr3:16932244-16933359 FORWARD LENGTH=311
          Length = 311

 Score =  228 bits (581), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 141/350 (40%), Positives = 185/350 (52%), Gaps = 66/350 (18%)

Query: 36  KPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMYSWS 95
           KP   R V VVYYLSRNG+L+HPHF+EV LSS +GL+LKDVI+RLN LRG GMA +YSWS
Sbjct: 13  KPSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVINRLNDLRGNGMACLYSWS 72

Query: 96  AKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTSPQTQKSEEES 155
           +KR+YKNGFVW+DLS+ DFI+P  GQ+Y+LKGS+IL+                       
Sbjct: 73  SKRTYKNGFVWYDLSDEDFIFPVHGQEYVLKGSQILDLDNNSGNF--------------- 117

Query: 156 DFPAAITRRRNQSWGSMDLNEYRVYKSDSFGDSAGR--VAEAATQTDDXXXXXXXXXXXX 213
              +A+T RRNQSW S+D   Y+VYK+      A R    +A+TQTDD            
Sbjct: 118 ---SAVTHRRNQSWSSVD--HYKVYKASELNAEATRKLSMDASTQTDDRRRRKSPVDEV- 171

Query: 214 XXXXXXXXXXXXXXXXXXXRVPHQSTELSREEIX----------XXXXXXXXEXXXXXXX 263
                                 ++ TELSREEI                   +       
Sbjct: 172 ----------------------NEVTELSREEITSPPQSDSSPETLESLMRADGRLILLQ 209

Query: 264 XXXXXXXXXXXXXXSSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHG 323
                         S+VL+QL+SCGA+SFK+ G          + G+ +S   RG GN+ 
Sbjct: 210 EDQELNRTVEKMRPSAVLMQLISCGAMSFKKCGPTL-------MNGNTRSTAVRGTGNYR 262

Query: 324 GKEVGTLMEIPDLSRVRLEDKEYFSGSLIE--TQKVETPSLKRSNSYNAD 371
            +      E+    RV+LE+KEYFSGSLI+  ++K   P+LKRS+SYN D
Sbjct: 263 LERAEK--ELKSFGRVKLEEKEYFSGSLIDESSKKELVPALKRSSSYNID 310


>AT2G28150.1 | Symbols:  | Domain of unknown function (DUF966) |
           chr2:12000015-12002227 FORWARD LENGTH=540
          Length = 540

 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 121/219 (55%), Gaps = 58/219 (26%)

Query: 31  VWTEPKPK---TTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKG 87
           VWTE  PK     ++V +VYYLS+N QLEHPHFMEV +SSP+GL+L+DVI+RLN LRG+G
Sbjct: 19  VWTEKSPKYHQKIKKVQIVYYLSKNRQLEHPHFMEVLISSPNGLYLRDVIERLNVLRGRG 78

Query: 88  MATMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHA------------- 134
           MA+MYSWS+KRSY+NGFVWHDLSE+D I P  G +Y+LKGSE+ + +             
Sbjct: 79  MASMYSWSSKRSYRNGFVWHDLSEDDLILPANGNEYVLKGSELFDESNSDHFSPIVNLAT 138

Query: 135 -------------------------GGGAGVAPHT------SPQTQKSEEESDF-PAAIT 162
                                      G G   H+      SP   +S   S   P +  
Sbjct: 139 QNMKQIVVEPPSSRSMDDSSSSSSMNNGKGTNKHSHEDDELSPPALRSVSSSGVSPDSRD 198

Query: 163 RRRNQSWGSMDLNEYRVYKSDSFGDSAGRVAEAATQTDD 201
            + + SW    L EY+VYKS+   D       A+TQTD+
Sbjct: 199 AKNSSSWC---LAEYKVYKSEGLAD-------ASTQTDE 227



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 21/120 (17%)

Query: 278 SSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHGGKEVGTLM------ 331
           S++L+QL+SCG++S K        D  F LV  YK +               +M      
Sbjct: 333 SNMLMQLISCGSISVK--------DNNFGLVPTYKPKFGHSKFPSPFFSSSFMMGDLDRL 384

Query: 332 -EIPDLSRVRLEDKEYFSGSLIET--QKVE----TPSLKRSNSYNADSGSRLQMIEHEGE 384
            E P L  +R+E+KEYFSGSL+ET  QK +      SLKRS+SYN D  S    +   G+
Sbjct: 385 SETPSLMGLRMEEKEYFSGSLVETKLQKKDAADSNASLKRSSSYNGDRASNQMGVAENGD 444


>AT5G10150.1 | Symbols:  | Domain of unknown function (DUF966) |
           chr5:3182176-3183834 REVERSE LENGTH=414
          Length = 414

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 41  RRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMYSWSAKRSY 100
           RRV VVYYL+RNG LEHPHF+EV       L L+DV++RL  LRGK M + Y+WS KRSY
Sbjct: 44  RRVQVVYYLTRNGHLEHPHFIEVISPVNQPLRLRDVMNRLTILRGKCMTSQYAWSCKRSY 103

Query: 101 KNGFVWHDLSENDFIYPTQGQDYILKGSEI 130
           +NGFVW+DL+END IYP+   +Y+LKGSEI
Sbjct: 104 RNGFVWNDLAENDVIYPSDCAEYVLKGSEI 133



 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 279 SVLLQLLSCGAVSFKESGAGA----GKDQGFSLVGHYKSRLPRGAGNHGGKEVGTLMEIP 334
           S+ LQ++SCG ++ K           K++        K+ + +   +   + +  + E P
Sbjct: 275 SMWLQMISCGHIATKYYAPSVMNPRQKEENLRKGVLCKNIVKKTVVDDEREMIRFMSENP 334

Query: 335 DLSRVRLEDKEYFSGSLIETQKVE----TPSLKRSNSYNADSGSRLQMI-----EHEGEV 385
                + E+KEYFSGS++E+   E     PSL+RSNS+N +    ++M      + E  +
Sbjct: 335 RFGNPQAEEKEYFSGSIVESVSQERVTAEPSLRRSNSFNEERSKIVEMAKETKKKEERSM 394

Query: 386 VRAKCIPR 393
            + KCIPR
Sbjct: 395 AKVKCIPR 402


>AT1G05577.1 | Symbols:  | Domain of unknown function (DUF966) |
           chr1:1662643-1664288 REVERSE LENGTH=372
          Length = 372

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 62/92 (67%)

Query: 40  TRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMYSWSAKRS 99
            RRV++VY+LSR+G ++HPH + V   S +G+ L+DV   L   RG  M   +SWS KR 
Sbjct: 10  VRRVNLVYFLSRSGHVDHPHLLRVHHLSRNGVFLRDVKKWLADARGDAMPDAFSWSCKRR 69

Query: 100 YKNGFVWHDLSENDFIYPTQGQDYILKGSEIL 131
           YKNG+VW DL ++D I P    +Y+LKGSEIL
Sbjct: 70  YKNGYVWQDLLDDDLITPISDNEYVLKGSEIL 101