Miyakogusa Predicted Gene

Lj3g3v3153010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3153010.1 Non Chatacterized Hit- tr|D8TJX3|D8TJX3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,38.36,8e-19,RECA_2,DNA recombination/repair protein RecA/RadB,
ATP-binding domain; no description,NULL; Rad51,DN,CUFF.45354.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51...   216   7e-57
AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51...   177   4e-45
AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...    63   2e-10
AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...    62   2e-10
AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...    62   2e-10
AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...    62   3e-10
AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51...    50   1e-06

>AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
           | chr1:2400797-2402842 REVERSE LENGTH=322
          Length = 322

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 146/210 (69%), Gaps = 9/210 (4%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPLK LE E P++D+ FQ+FCASH I ++EDFLLHDL  L AF+     + RLK+GI  
Sbjct: 1   MAPLKHLEKENPIIDACFQDFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITL 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           +LS+I+    PL+ G +LL D  RNKH LSTG    D+LL GG REGQLTELVGPSSSGK
Sbjct: 61  ILSLIERQCRPLVNGLKLLEDLHRNKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIAR-HKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGR 179
           TQ C+ +AA++A  H   V+YLDTGNSFS +RIA F+  S D+           Q+V+ R
Sbjct: 121 TQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSDATLG--------QKVMSR 172

Query: 180 IICYSVFDIYQMFDVLHRLKINLRSEVLID 209
           I+C++V+DIY +FD L  L+I LR ++ ++
Sbjct: 173 ILCHTVYDIYTLFDTLQDLEITLRLQMNVN 202


>AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
           | chr1:2400797-2402492 REVERSE LENGTH=304
          Length = 304

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 124/183 (67%), Gaps = 9/183 (4%)

Query: 28  FSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQLLSIIDALRPPLLTGSQLLADAKRNKH 87
            +VEDFLLHDL  L AF+     + RLK+GI  +LS+I+    PL+ G +LL D  RNKH
Sbjct: 10  IAVEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNKH 69

Query: 88  VLSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQVCLLSAATIAR-HKSSVIYLDTGNS 146
            LSTG    D+LL GG REGQLTELVGPSSSGKTQ C+ +AA++A  H   V+YLDTGNS
Sbjct: 70  TLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNS 129

Query: 147 FSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRIICYSVFDIYQMFDVLHRLKINLRSEV 206
           FS +RIA F+  S D+           Q+V+ RI+C++V+DIY +FD L  L+I LR ++
Sbjct: 130 FSARRIAQFICSSSDATLG--------QKVMSRILCHTVYDIYTLFDTLQDLEITLRLQM 181

Query: 207 LID 209
            ++
Sbjct: 182 NVN 184


>AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12237438-12238913 REVERSE LENGTH=243
          Length = 243

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 64  IIDALRPPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           I +A  PP  +   LL     N+H+   L T   G+D  L GG+  G LTELVGP   GK
Sbjct: 24  ISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 83

Query: 121 TQVCL---LSAATIARH---KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQ 174
           +Q C+   LSA+    +      VIY+D  + FS +R+     +S+  V H +      Q
Sbjct: 84  SQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMA---Q 140

Query: 175 EVLGRIICYSVFDIYQMFDVLHRLK 199
           E+ GRI+      +    + +  LK
Sbjct: 141 EMAGRILVLRPTSLANFTESIQELK 165


>AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12236876-12238913 REVERSE LENGTH=338
          Length = 338

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 64  IIDALRPPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           I +A  PP  +   LL     N+H+   L T   G+D  L GG+  G LTELVGP   GK
Sbjct: 24  ISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 83

Query: 121 TQVCL---LSAATIARH---KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQ 174
           +Q C+   LSA+    +      VIY+D  + FS +R+     +S+  V H +      Q
Sbjct: 84  SQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGM---AQ 140

Query: 175 EVLGRIICYSVFDIYQMFDVLHRLK 199
           E+ GRI+      +    + +  LK
Sbjct: 141 EMAGRILVLRPTSLANFTESIQELK 165


>AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12237052-12239086 REVERSE LENGTH=371
          Length = 371

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 64  IIDALRPPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           I +A  PP  +   LL     N+H+   L T   G+D  L GG+  G LTELVGP   GK
Sbjct: 56  ISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 115

Query: 121 TQVCL---LSAATIARH---KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQ 174
           +Q C+   LSA+    +      VIY+D  + FS +R+     +S+  V H +      Q
Sbjct: 116 SQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMA---Q 172

Query: 175 EVLGRIICYSVFDIYQMFDVLHRLK 199
           E+ GRI+      +    + +  LK
Sbjct: 173 EMAGRILVLRPTSLANFTESIQELK 197


>AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12236876-12239086 REVERSE LENGTH=370
          Length = 370

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 64  IIDALRPPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           I +A  PP  +   LL     N+H+   L T   G+D  L GG+  G LTELVGP   GK
Sbjct: 56  ISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 115

Query: 121 TQVCL---LSAATIARH---KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQ 174
           +Q C+   LSA+    +      VIY+D  + FS +R+     +S+  V H +      Q
Sbjct: 116 SQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGM---AQ 172

Query: 175 EVLGRIICYSVFDIYQMFDVLHRLK 199
           E+ GRI+      +    + +  LK
Sbjct: 173 EMAGRILVLRPTSLANFTESIQELK 197


>AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51)
           family protein | chr3:8097948-8100740 REVERSE LENGTH=344
          Length = 344

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 73  LTGSQLLADAKRNKHV-LSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQ----VCLLS 127
           +TGS  L   KR   V ++TGC  +D LLGGG+    +TE  G   SGKTQ    +C+ +
Sbjct: 93  MTGSDALI--KRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTT 150

Query: 128 A--ATIARHKSSVIYLDTGNSFSPQRI 152
                +      V Y+DT  +F P RI
Sbjct: 151 QLPTNMKGGNGKVAYIDTEGTFRPDRI 177