Miyakogusa Predicted Gene

Lj3g3v3118700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3118700.1 Non Chatacterized Hit- tr|I1KDR3|I1KDR3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16337
PE,84.75,5e-19,Proteasom_PSMB,26S proteasome non-ATPase regulatory
subunit 5; 26S PROTEASOME NON-ATPASE REGULATORY ,CUFF.45329.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15180.1 | Symbols:  | ARM repeat superfamily protein | chr3:...   169   7e-43
AT3G15180.2 | Symbols:  | ARM repeat superfamily protein | chr3:...   168   8e-43

>AT3G15180.1 | Symbols:  | ARM repeat superfamily protein |
           chr3:5111952-5115803 FORWARD LENGTH=519
          Length = 519

 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 100/130 (76%)

Query: 1   MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
           M+D +QL  AA +FA+YPG Q++ S ++FL+RFPLP+I NALQT  D+PG ENTLV CLE
Sbjct: 1   MEDVNQLFDAAFEFAHYPGAQNETSVKEFLDRFPLPVIFNALQTDPDIPGFENTLVTCLE 60

Query: 61  SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAEFN 120
            +FKTK GASLIPQYMP +QVGL+ADS  V+SLACKTV CLL++ D +   +  L+    
Sbjct: 61  RLFKTKYGASLIPQYMPVLQVGLKADSAVVKSLACKTVLCLLEDCDTNDVSSVQLVVNNG 120

Query: 121 IYPLLLDCLI 130
           IYPLLLD +I
Sbjct: 121 IYPLLLDYII 130


>AT3G15180.2 | Symbols:  | ARM repeat superfamily protein |
           chr3:5111952-5115803 FORWARD LENGTH=551
          Length = 551

 Score =  168 bits (426), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 100/130 (76%)

Query: 1   MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
           M+D +QL  AA +FA+YPG Q++ S ++FL+RFPLP+I NALQT  D+PG ENTLV CLE
Sbjct: 1   MEDVNQLFDAAFEFAHYPGAQNETSVKEFLDRFPLPVIFNALQTDPDIPGFENTLVTCLE 60

Query: 61  SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAEFN 120
            +FKTK GASLIPQYMP +QVGL+ADS  V+SLACKTV CLL++ D +   +  L+    
Sbjct: 61  RLFKTKYGASLIPQYMPVLQVGLKADSAVVKSLACKTVLCLLEDCDTNDVSSVQLVVNNG 120

Query: 121 IYPLLLDCLI 130
           IYPLLLD +I
Sbjct: 121 IYPLLLDYII 130