Miyakogusa Predicted Gene

Lj3g3v3097580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3097580.2 Non Chatacterized Hit- tr|I1M4P3|I1M4P3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22757
PE,82.28,0,RRM_1,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RING/U-box,NULL; SUBFAMILY NOT NAM,CUFF.45309.2
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60170.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   476   e-135
AT5G60170.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   468   e-132
AT3G45630.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   467   e-132
AT2G28540.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   457   e-129
AT2G28540.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   457   e-129
AT3G48070.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    63   3e-10
AT3G48070.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    63   3e-10
AT5G62910.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    62   4e-10
AT1G74870.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    62   7e-10

>AT5G60170.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:24228178-24232394 FORWARD LENGTH=987
          Length = 987

 Score =  476 bits (1226), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 259/313 (82%), Gaps = 4/313 (1%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSD GE+TCPLCAEEMDLTDQQLKPCKCGY+ICVWCWHHI+DMAEKD  EGRCPACR+PY
Sbjct: 1   MSDHGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQ-LSSVRVIQRNLVYIVGLPLN 119
           DK+KIVGM   C+ L SE +ME            +GRKQ L+SVRVIQRNLVYIVGLPLN
Sbjct: 61  DKEKIVGMTVNCDSLASEGNMERKKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLN 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQ +EYF QYGKVLKVSMSRTA+GVIQQFPN+TCSVYITY KEEEA+RCIQ VH
Sbjct: 121 LADEDLLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GFIL+G+PL+ACFGTTKYCHAWLRN  C NPDCLYLHE+GSQ+DSF+KDEIISAYTRSRV
Sbjct: 181 GFILDGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYTRSRV 240

Query: 240 QQITGHVNNLIRRSGNVLPPPIDD-CTNNSSGKPILKSASSNCSSTVR--DSPPNGIYGR 296
           QQITG  N L   SGN+LPPP+D  C+++SS KPI+K  S+N +S  R      +G   R
Sbjct: 241 QQITGATNILQHHSGNMLPPPLDAYCSDSSSAKPIIKVPSTNATSVPRYSPPSGSGSSSR 300

Query: 297 NVALPASAAWGTQ 309
           + ALPA+A+WGT 
Sbjct: 301 STALPAAASWGTH 313


>AT5G60170.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:24228178-24232394 FORWARD LENGTH=985
          Length = 985

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/313 (72%), Positives = 257/313 (82%), Gaps = 6/313 (1%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSD GE+TCPLCAEEMDLTDQQLKPCKCGY+ICVWCWHHI+DMAEKD  EGRCPACR+PY
Sbjct: 1   MSDHGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQ-LSSVRVIQRNLVYIVGLPLN 119
           DK+KIVGM   C+ L SE +ME            +GRKQ L+SVRVIQRNLVYIVGLPLN
Sbjct: 61  DKEKIVGMTVNCDSLASEGNMERKKIQKSKSKSSEGRKQQLTSVRVIQRNLVYIVGLPLN 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQ +EYF QYGKVLKVSMSRTA+GVIQQFPN+TCSVYITY KEEEA+RCIQ VH
Sbjct: 121 LADEDLLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GFIL+G+PL+ACFGTTKYCHAWLRN  C NPDCLYLHE+GSQ+DSF+KDEIISAYT  RV
Sbjct: 181 GFILDGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYT--RV 238

Query: 240 QQITGHVNNLIRRSGNVLPPPIDD-CTNNSSGKPILKSASSNCSSTVR--DSPPNGIYGR 296
           QQITG  N L   SGN+LPPP+D  C+++SS KPI+K  S+N +S  R      +G   R
Sbjct: 239 QQITGATNILQHHSGNMLPPPLDAYCSDSSSAKPIIKVPSTNATSVPRYSPPSGSGSSSR 298

Query: 297 NVALPASAAWGTQ 309
           + ALPA+A+WGT 
Sbjct: 299 STALPAAASWGTH 311


>AT3G45630.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:16748751-16753190 REVERSE LENGTH=989
          Length = 989

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/313 (72%), Positives = 260/313 (83%), Gaps = 3/313 (0%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSD GE+TCPLCAEEMDLTDQQLKPCKCGY+ICVWCWHHIMDMAEKD +EGRCPACR+PY
Sbjct: 1   MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLNL 120
           DK+KIVGM    ERL SE +M+            DGRK L+SVRV+QRNLVYIVGLPLNL
Sbjct: 61  DKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNL 120

Query: 121 ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG 180
           ADEDLLQR+EYF QYGKVLKVSMSRTA G+IQQFPN+TCSVYITY KEEEAIRCIQ+VHG
Sbjct: 121 ADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVHG 180

Query: 181 FILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRVQ 240
           FIL+G+ L+ACFGTTKYCHAWLRN  C+N DCLYLHE+GSQEDSF+KDEIISA+T  RVQ
Sbjct: 181 FILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHT--RVQ 238

Query: 241 QITGHVNNLIRRSGNVLPPPIDDCTNNSS-GKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QITG  N +  RSG++LPPP+D  T++SS G PI K  SS   S  + SPP+G  G++ A
Sbjct: 239 QITGATNTMQYRSGSMLPPPLDAYTSDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKSTA 298

Query: 300 LPASAAWGTQPTN 312
           LPA+A+WG + TN
Sbjct: 299 LPAAASWGARLTN 311


>AT2G28540.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:12218652-12223446 FORWARD LENGTH=882
          Length = 882

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/332 (63%), Positives = 255/332 (76%), Gaps = 11/332 (3%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           M+++GE+TCPLC EEMDLTDQ LKPCKCGY+ICVWCWHHI++MAEKD TEGRCPACR+ Y
Sbjct: 1   MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLNL 120
           DK+KIVGM  +CERLV+E +++            +GRK L+ VRVIQRNLVY++ LP +L
Sbjct: 61  DKEKIVGMTVSCERLVAEFYIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFDL 120

Query: 121 ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG 180
           ADED+ QRREYF QYGKV+KV+MSRTAAG +QQFPN+TCSVYITYSKEEEAIRCI++VHG
Sbjct: 121 ADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHG 180

Query: 181 FILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRVQ 240
           FIL+GR L+ACFGT KYCHAWLRN PCSN +CLYLHEIG+QEDSFSKDE ISA+ R  VQ
Sbjct: 181 FILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQ 240

Query: 241 QITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPIL-KSASSNCSSTVRDSPPNGIYGRNVA 299
            ITG  ++ +RRSG++LPPP+DD  +N S   I+ K   +N  S  ++SPPN     +V 
Sbjct: 241 DITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVT 300

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKP 331
           LPA A WG             S PN PS  +P
Sbjct: 301 LPAGAMWGMH----------SSVPNTPSSREP 322


>AT2G28540.2 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:12218652-12223594 FORWARD LENGTH=960
          Length = 960

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/332 (63%), Positives = 255/332 (76%), Gaps = 11/332 (3%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           M+++GE+TCPLC EEMDLTDQ LKPCKCGY+ICVWCWHHI++MAEKD TEGRCPACR+ Y
Sbjct: 1   MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLNL 120
           DK+KIVGM  +CERLV+E +++            +GRK L+ VRVIQRNLVY++ LP +L
Sbjct: 61  DKEKIVGMTVSCERLVAEFYIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFDL 120

Query: 121 ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG 180
           ADED+ QRREYF QYGKV+KV+MSRTAAG +QQFPN+TCSVYITYSKEEEAIRCI++VHG
Sbjct: 121 ADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHG 180

Query: 181 FILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRVQ 240
           FIL+GR L+ACFGT KYCHAWLRN PCSN +CLYLHEIG+QEDSFSKDE ISA+ R  VQ
Sbjct: 181 FILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQ 240

Query: 241 QITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPIL-KSASSNCSSTVRDSPPNGIYGRNVA 299
            ITG  ++ +RRSG++LPPP+DD  +N S   I+ K   +N  S  ++SPPN     +V 
Sbjct: 241 DITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVT 300

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKP 331
           LPA A WG             S PN PS  +P
Sbjct: 301 LPAGAMWGMH----------SSVPNTPSSREP 322


>AT3G48070.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:17750878-17751978 FORWARD LENGTH=319
          Length = 319

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 8   TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKKKIVG 67
           +CP+C E++DLTD    PC CG+ +C++C   I       D +GRCP CR PY++  I  
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNTIKF 296

Query: 68  MAAT 71
            A+ 
Sbjct: 297 EASV 300


>AT3G48070.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:17750878-17752297 FORWARD LENGTH=350
          Length = 350

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 8   TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKKKIVG 67
           +CP+C E++DLTD    PC CG+ +C++C   I       D +GRCP CR PY++  I  
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNTIKF 296

Query: 68  MAAT 71
            A+ 
Sbjct: 297 EASV 300


>AT5G62910.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:25250830-25252015 FORWARD LENGTH=327
          Length = 327

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)

Query: 8   TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKKKI 65
           +CP+C E++DLTD    PC CG+ +C++C   I       D +GRCP CR PY++  +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNMV 302


>AT1G74870.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28127093-28128275 FORWARD LENGTH=289
          Length = 289

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 6/59 (10%)

Query: 4   EGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDK 62
           +G+  CP+C+E MD TD + +PC CG+ IC++C + I       + E RCPACR  Y K
Sbjct: 207 DGDEECPICSELMDATDLEFEPCTCGFRICLFCHNKIS------ENEARCPACRKDYKK 259