Miyakogusa Predicted Gene

Lj3g3v3087300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3087300.1 tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA
polymerase subunit OS=Lotus japonicus PE=3
SV=1,85.71,0.0000000000001,seg,NULL; ZF_TFIIS_2,Zinc finger,
TFIIS-type; no description,NULL; C2C2 Zinc finger,Zinc finger,
TFI,CUFF.45299.1
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G07950.1 | Symbols:  | DNA-directed RNA polymerase, subunit M...    48   1e-06
AT1G01210.1 | Symbols:  | DNA-directed RNA polymerase, subunit M...    48   1e-06

>AT4G07950.1 | Symbols:  | DNA-directed RNA polymerase, subunit M,
           archaeal | chr4:4798910-4799510 FORWARD LENGTH=106
          Length = 106

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C +C HDKA +   Q RSADEP + FY CL  KC + WRE
Sbjct: 68  CPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWRE 105


>AT1G01210.1 | Symbols:  | DNA-directed RNA polymerase, subunit M,
           archaeal | chr1:88977-89529 FORWARD LENGTH=106
          Length = 106

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C +C HDKA +   Q RSADEP + FY CL  KC + WRE
Sbjct: 68  CPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWRE 105