Miyakogusa Predicted Gene

Lj3g3v3087290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3087290.2 Non Chatacterized Hit- tr|G7JRI2|G7JRI2_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,48.58,0,seg,NULL; coiled-coil,NULL,CUFF.45298.2
         (1414 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60150.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...    76   2e-13

>AT5G60150.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
            1807 proteins in 277 species: Archae - 0; Bacteria - 0;
            Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
            Other Eukaryotes - 339 (source: NCBI BLink). |
            chr5:24218211-24223245 FORWARD LENGTH=1195
          Length = 1195

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1317 AEDSNKMIQLPKSTIKSKQEVPALKPPPNAAPFSDXXXXXXXXXXXXXXTMKSGAVQNSP 1376
            +E ++KMI L       K+  P +  PPNA PFSD              T+KSG VQ+SP
Sbjct: 1099 SEGNDKMILLDAKL--EKKPDPIIVKPPNAVPFSDEWLAAIEAAGEEILTLKSGRVQHSP 1156

Query: 1377 PHKPQHEPSPWSPVRRKSQAIGPFDCTK 1404
              K   EP PWSPV++ +Q +GPFDCTK
Sbjct: 1157 TEKSAPEPGPWSPVKKSNQVVGPFDCTK 1184